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Report for CCDS23046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23046.1 Public Mus musculus 9 Or8g34 23 108 98 CCDS HistoryNCBI Gene:258328Re-query CCDS DB by CCDS ID:23046.1Re-query CCDS DB by GeneID:258328See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080329.1 ENSMUSP00000079205.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080329.1Link to Ensembl Protein Viewer:ENSMUSP00000079205.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000080329Re-query CCDS DB by Protein ID:ENSMUSP00000079205
Original member Current member NCBI NM_146331.1 NP_666443.1 Accepted alive Link to Nucleotide Sequence:NM_146331.1Link to Protein Sequence:NP_666443.1Re-query CCDS DB by Nucleotide ID:NM_146331Re-query CCDS DB by Protein ID:NP_666443Link to BLAST:NP_666443.1

Chromosomal Locations for CCDS 23046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39461433 39462377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAGGACATGCCAGCAGGAAACCATTGCACAGTGACTGTGTTCTTCTTAGCTGGGCTCTCAGAGCAGT
CAGAACTCCAGCTGCCCCTGTTCCTCTTCTTCACAGGAATCTATCTGATCACTGTGTCTGGGAATCTGGG
CATGATTATACTAATTGGGCTCAGTTCCAACCTGCACACACCCATGTACTATTTCCTCAGCAGTTTGTCC
TTCATTGACTTTGGTCAGTCCACAGTTGTTACCCCTAAAATGCTGGTGAGCTTTCTGACAGAGAAGAACC
TCATCACCTACCCTGAATGCTTGGCTCAGCTCTACTTTGCCATCATTTTTGGCACAGCAGAGAGCTACAC
ATTAGCTGCAATGGCATATGACCGCTATGTTGCCATCTGTAACCCCTTGGTTTACAATATAGCCATGTCC
TCTCAGATTTACTGTTCTCTGATTTCAGGGGTATACATTTTTGCTGTGTTCTGTGCATCAGTAAACATGG
GCTTCATGTTTAGGATCCAGTTCTGCAAATCAGATGTAATCAACCACTATTTCTGTGATTTCCTTCCCCT
CTTGAAACTTGCATGCTCTAATACATATGTCAGTGAAATGTTGATTCTATTTTTTGGTACACTGAATATC
TTTGTCCCAATGCTGACCATTATTACTTCCTACATCTCCATTATTTCCAGCATCCTCCGCATTAGCTCTA
GTGAGGGCAGGTCCAAAGCCTTTAGTACTTGCAGTTCCCACATCTCTGCTGTTGCTGTCTTCTATGGTTC
TACAGCATTTGTGTACTTACAGCCATCACGAGTAAGTTCAATAGACCAAGGGAAAGTGTCCTCTGTGTTT
TATACGACTGTTGTTCCCATGCTGAACCCCTTGATCTACAGCCTGAGGAATAAGGATGTCAGTGTTGCAA
TGAAGAAAATACTTGAAAGGAAAAGATTCATGTAA

Translation (314 aa):
MEDMPAGNHCTVTVFFLAGLSEQSELQLPLFLFFTGIYLITVSGNLGMIILIGLSSNLHTPMYYFLSSLS
FIDFGQSTVVTPKMLVSFLTEKNLITYPECLAQLYFAIIFGTAESYTLAAMAYDRYVAICNPLVYNIAMS
SQIYCSLISGVYIFAVFCASVNMGFMFRIQFCKSDVINHYFCDFLPLLKLACSNTYVSEMLILFFGTLNI
FVPMLTIITSYISIISSILRISSSEGRSKAFSTCSSHISAVAVFYGSTAFVYLQPSRVSSIDQGKVSSVF
YTTVVPMLNPLIYSLRNKDVSVAMKKILERKRFM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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