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Report for CCDS24599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24599.1 Public Mus musculus 11 Or2o1 23 108 98 CCDS HistoryNCBI Gene:258273Re-query CCDS DB by CCDS ID:24599.1Re-query CCDS DB by GeneID:258273See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052668.1 ENSMUSP00000063062.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052668.1Link to Ensembl Protein Viewer:ENSMUSP00000063062.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000052668Re-query CCDS DB by Protein ID:ENSMUSP00000063062
Original member Current member EBI ENSMUST00000216273.1 ENSMUSP00000149520.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216273.1Link to Ensembl Protein Viewer:ENSMUSP00000149520.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216273Re-query CCDS DB by Protein ID:ENSMUSP00000149520
Original member Current member NCBI NM_146276.1 NP_666388.1 Accepted alive Link to Nucleotide Sequence:NM_146276.1Link to Protein Sequence:NP_666388.1Re-query CCDS DB by Nucleotide ID:NM_146276Re-query CCDS DB by Protein ID:NP_666388Link to BLAST:NP_666388.1

Chromosomal Locations for CCDS 24599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49160016 49160954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCAGAGGAGCTCTGGAATCATTCCTCCCTGTCCAGCTTCATCCTTGCCGGCCTGTTCGGCCACTCAC
CTTATGACTCTTTCTTCTTCTCCCTGGTTCTTCTGGCCTTTGGGGCTGCTGTGGTTGGTAACATCCTCCT
CTTGATGGTCATCCAGGTGGATAGACGCCTGCACACCCCCATGTACTTCTTCCTCAGTCAGCTCTCCATC
ATGGACTTGACTATGACATGCACAGTGGTACCCAAGATGGCAACCAACTTTCTCTCAGGCGGGAAGCTCA
TCTCGCTGGGAGGCTGTGCGTCTCAGATCTTCTTTGTAGTTACTGTAGGAGGTGCTGAGTGCTTCCTCTT
GGCCGTCATGGCCTACGATAGGTATATGGCTGTCTGCTACCCACTGAGGTACCCTGTACTGATGAACTGG
AAGGCCTGCTCTTTCTTGGCCACGGCATCCTGGATGGGTGGCATGGCAGACAGTGTGATTGATGTGGGTG
TGGTCTTTAGCTTTCCCTATTGTGGATCTCTAGAGGTGGACCACTTCTTCTGTGAGGTTCCTGCCCTGTT
GCGCCTCTCCTGTGCAGACACCTCACTATTTGAGGACCTCATCTATGCATGTTGTGTGGTGATGTTACTG
CTGCCTCTTGGGGTCATTGTGGCATCCTATGCTCGGGTCCTCACAACTGTGATGAGGATGCCCTCCACTG
AGGGGAAACAGAAGGCCCTCACCACTTGCTCTTCCCACCTGGCCGTGGTGGGCCTCTACTACGGGGGAGC
CATATTTAGCTACATGCAGCGAGCCTCGGCTAGAACACCACTGGGGGATAGAGCCACCTCCATCTTCTAC
ACTATTGTCACCCCAATGTTCAACCCACTTATTTACAGTCTGAGGAATAGGGAGGTAACCAGTGCCCTGA
AGAAGATGCTGGAGAGGTGGGGCATGTAG

Translation (312 aa):
MAEELWNHSSLSSFILAGLFGHSPYDSFFFSLVLLAFGAAVVGNILLLMVIQVDRRLHTPMYFFLSQLSI
MDLTMTCTVVPKMATNFLSGGKLISLGGCASQIFFVVTVGGAECFLLAVMAYDRYMAVCYPLRYPVLMNW
KACSFLATASWMGGMADSVIDVGVVFSFPYCGSLEVDHFFCEVPALLRLSCADTSLFEDLIYACCVVMLL
LPLGVIVASYARVLTTVMRMPSTEGKQKALTTCSSHLAVVGLYYGGAIFSYMQRASARTPLGDRATSIFY
TIVTPMFNPLIYSLRNREVTSALKKMLERWGM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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