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Report for CCDS53876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53876.1 Public Homo sapiens 13 LMO7 24 110 108 CCDS HistoryNCBI Gene:4008Re-query CCDS DB by CCDS ID:53876.1Re-query CCDS DB by GeneID:4008See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53876.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000465261.6 ENSP00000433352.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000465261.6Link to Ensembl Protein Viewer:ENSP00000433352.1Re-query CCDS DB by Nucleotide ID:ENST00000465261Re-query CCDS DB by Protein ID:ENSP00000433352
Original member Current member NCBI NM_001366632.2 NP_001353561.1 Accepted alive Link to Nucleotide Sequence:NM_001366632.2Link to Protein Sequence:NP_001353561.1Re-query CCDS DB by Nucleotide ID:NM_001366632Re-query CCDS DB by Protein ID:NP_001353561Link to BLAST:NP_001353561.1
Original member Current member NCBI NM_015842.2 NP_056667.2 Accepted alive Link to Nucleotide Sequence:NM_015842.2Link to Protein Sequence:NP_056667.2Re-query CCDS DB by Nucleotide ID:NM_015842Re-query CCDS DB by Protein ID:NP_056667Link to BLAST:NP_056667.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353561.1 1385 Q8WWI1-5 1385 99.8556% 0 2
NP_056667.2 1385 Q8WWI1-5 1385 99.8556% 0 2

Chromosomal Locations for CCDS 53876.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 75804327 75804541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75805479 75805760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75807480 75808199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75809154 75809183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75817161 75817278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75819393 75819535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75821177 75821609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75823565 75823873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75833051 75833165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75834226 75834387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75835233 75835339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75836397 75836457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75838140 75838196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75840085 75840110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75840391 75840495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75841109 75841201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75841628 75841983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75842851 75842916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75845327 75845379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75849079 75849292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75853092 75853388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75856506 75856608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75857921 75858013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4158 nt):
ATGCAGGATTATAATAAAGATGATATGTCGTATCGAAGGATTTCGGCTGTTGAGCCAAAGACTGCGTTAC
CCTTCAATCGTTTTTTACCCAACAAAAGTAGACAGCCATCCTATGTACCAGCACCTCTGAGAAAGAAAAA
GCCAGACAAACATGAGGATAACAGAAGAAGTTGGGCAAGCCCGGTTTATACAGAAGCAGATGGAACATTT
TCAAGTAATCAGAGGAGGATTTGGGGCACCAATGTGGAGAACTGGCCAACTGTACAAGGAACTTCAAAGT
CCTCTTGTTATTTGGAAGAGGAAAAAGCAAAGACAAGAAGCATACCCAACATTGTAAAGGATGATCTTTA
TGTGCGCAAGCTCAGTCCAGTCATGCCAAACCCAGGGAATGCTTTTGATCAGTTTCTTCCCAAATGTTGG
ACCCCAGAAGATGTGAACTGGAAAAGAATAAAAAGGGAAACTTATAAGCCATGGTATAAAGAATTTCAGG
GATTCAGTCAGTTTTTACTGCTTCAGGCCCTCCAAACATACTCTGATGACATCTTGTCTTCTGAAACACA
TACCAAAATTGATCCCACTTCTGGCCCAAGGCTCATAACCCGCAGGAAGAATCTCTCTTATGCACCAGGC
TATAGAAGAGATGACCTCGAGATGGCAGCCCTGGATCCTGACTTAGAGAATGATGATTTCTTTGTCAGAA
AGACTGGGGCTTTCCATGCAAATCCATATGTTCTCCGAGCTTTTGAAGACTTTAGAAAGTTCTCTGAGCA
AGATGATTCTGTAGAGCGAGATATAATTTTACAGTGTAGAGAAGGTGAACTTGTACTTCCGGATTTGGAA
AAAGATGATATGATTGTTCGCCGAATTCCAGCACAGAAGAAAGAAGTGCCGCTGTCTGGGGCCCCAGATA
GATACCACCCAGTCCCTTTTCCCGAACCCTGGACTCTTCCTCCAGAAATTCAAGCAAAATTTCTCTGTGT
ACTTGAAAGGACATGCCCATCCAAAGAAAAAAGTAATAGCTGTAGAATATTAGTTCCTTCATATCGGCAG
AAGAAAGATGACATGCTGACACGTAAGATTCAGTCCTGGAAACTGGGAACTACCGTGCCTCCCATCAGTT
TCACCCCTGGCCCCTGCAGTGAGGCTGACTTGAAGAGATGGGAGGCCATCCGGGAGGCCAGCAGACTTAG
GCACAAGAAAAGGCTGATGGTGGAGAGACTCTTTCAAAAGATTTATGGTGAGAATGGGAGTAAGTCCATG
AGTGATGTCAGCGCAGAAGATGTTCAAAACTTGCGTCAGCTGCGTTACGAGGAGATGCAGAAAATAAAAT
CACAATTAAAAGAACAAGATCAGAAATGGCAGGATGACCTTGCAAAATGGAAAGATCGTCGAAAAAGTTA
CACTTCAGATCTGCAGAAGAAAAAAGAAGAGAGAGAAGAAATTGAAAAGCAGGCACTTGAGAAGTCTAAG
AGAAGCTCTAAGACGTTTAAGGAAATGCTGCAGGACAGGGAATCCCAAAATCAAAAGTCTACAGTTCCGT
CAAGAAGGAGAATGTATTCTTTTGATGATGTGCTGGAGGAAGGAAAGCGACCCCCTACAATGACTGTGTC
AGAAGCAAGTTACCAGAGTGAGAGAGTAGAAGAGAAGGGAGCAACTTATCCTTCAGAAATTCCCAAAGAA
GATTCTACCACTTTTGCAAAAAGAGAGGACCGTGTAACAACTGAAATTCAGCTTCCTTCTCAAAGTCCTG
TGGAAGAACAAAGCCCAGCCTCTTTGTCTTCTCTGCGTTCACGGAGCACACAAATGGAATCAACTCGTGT
TTCAGCTTCTCTCCCCAGAAGTTACCGGAAAACTGATACAGTCAGGTTAACATCTGTGGTCACACCAAGA
CCCTTTGGCTCTCAGACAAGGGGAATCTCATCACTCCCCAGATCTTACACGATGGATGATGCTTGGAAGT
ATAATGGAGATGTTGAAGACATTAAGAGAACTCCAAACAATGTGGTCAGCACCCCTGCACCAAGCCCGGA
CGCAAGCCAACTGGCTTCAAGCTTATCTAGCCAGAAAGAGGTAGCAGCAACAGAAGAAGATGTGACAAGG
CTGCCCTCTCCTACATCCCCCTTCTCATCTCTTTCCCAAGACCAGGCTGCCACTTCTAAAGCCACATTGT
CTTCCACATCTGGTCTTGATTTAATGTCTGAATCTGGAGAAGGGGAAATCTCCCCACAAAGAGAAGTCTC
AAGATCCCAGGATCAGTTCAGTGATATGAGAATCAGCATAAACCAGACGCCTGGGAAGAGTCTTGACTTT
GGGTTTACAATAAAATGGGATATTCCTGGGATCTTCGTAGCATCAGTTGAAGCAGGTAGCCCAGCAGAAT
TTTCTCAGCTACAAGTAGATGATGAAATTATTGCTATTAACAACACCAAGTTTTCATATAACGATTCAAA
AGAGTGGGAGGAAGCCATGGCTAAGGCTCAAGAAACTGGACACCTAGTGATGGATGTGAGGCGCTATGGA
AAGGCTGGTTCACCTGAAACAAAGTGGATTGATGCAACTTCTGGAATTTACAACTCAGAAAAATCTTCAA
ATCTATCTGTAACAACTGATTTCTCCGAAAGCCTTCAGAGTTCTAATATTGAATCCAAAGAAATCAATGG
AATTCATGATGAAAGCAATGCTTTTGAATCAAAAGCATCTGAATCCATTTCTTTGAAAAACTTAAAAAGG
CGATCACAATTTTTTGAACAAGGAAGCTCTGATTCGGTGGTTCCTGATCTTCCAGTTCCAACCATCAGTG
CCCCGAGTCGCTGGGTGTGGGATCAAGAGGAGGAGCGGAAGCGGCAGGAGAGGTGGCAGAAGGAGCAGGA
CCGCCTACTGCAGGAAAAATATCAACGTGAGCAGGAGAAACTGAGGGAAGAGTGGCAAAGGGCCAAACAG
GAGGCAGAGAGAGAGAATTCCAAGTACTTGGATGAGGAACTGATGGTCCTAAGCTCAAACAGCATGTCTC
TGACCACACGGGAGCCCTCTCTTGCCACCTGGGAAGCTACCTGGAGTGAAGGGTCCAAGTCTTCAGACAG
AGAAGGAACCCGAGCAGGAGAAGAGGAGAGGAGACAGCCACAAGAGGAAGTTGTTCATGAGGACCAAGGA
AAGAAGCCGCAGGATCAGCTTGTTATTGAGAGAGAGAGGAAATGGGAGCAACAGCTTCAGGAAGAGCAAG
AGCAAAAGCGGCTTCAGGCTGAGGCTGAGGAGCAGAAGCGTCCTGCGGAGGAGCAGAAGCGCCAGGCAGA
GATAGAGCGGGAAACATCAGTCAGAATATACCAGTACAGGAGGCCTGTTGATTCCTATGATATACCAAAG
ACAGAAGAAGCATCTTCAGGTTTTCTTCCTGGTGACAGGAATAAATCCAGATCTACTACTGAACTGGATG
ATTACTCCACAAATAAAAATGGAAACAATAAATATTTAGACCAAATTGGGAACATGACCTCTTCACAGAG
GAGATCCAAGAAAGAACAAGTACCATCAGGAGCAGAATTGGAGAGGCAACAAATCCTTCAGGAAATGAGG
AAGAGAACACCCCTTCACAATGACAACAGCTGGATCCGACAGCGCAGTGCCAGTGTCAACAAAGAGCCTG
TTAGTCTTCCTGGGATCATGAGAAGAGGCGAATCTTTAGATAACCTGGACTCCCCCCGATCCAATTCTTG
GAGACAGCCTCCTTGGCTCAATCAGCCCACAGGATTCTATGCTTCTTCCTCTGTGCAAGACTTTAGTCGC
CCACCACCTCAGCTGGTGTCCACATCAAACCGTGCCTACATGCGGAACCCCTCCTCCAGCGTGCCCCCAC
CTTCAGCTGGCTCCGTGAAGACCTCCACCACAGGTGTGGCCACCACACAGTCCCCCACCCCGAGAAGCCA
TTCCCCTTCAGCTTCACAGTCAGGCTCTCAGCTGCGTAACAGTGTGTTGCCTGTGAGTGTGACCTCGGAG
GCTCTTCCTCAGGAGCTGAAGTCAGGATCAGAAACCACCAACTGTACTGCAACGACTGCTATCTCAGATT
CAAATCTGGACGGCCAACCGCCATGTGATGTAAGCCTCCATACGAAAGCACTGTTGCAGATAGAAGAAGA
GGTGGTTGCTGCTCATGTAGATCTATAA

Translation (1385 aa):
MQDYNKDDMSYRRISAVEPKTALPFNRFLPNKSRQPSYVPAPLRKKKPDKHEDNRRSWASPVYTEADGTF
SSNQRRIWGTNVENWPTVQGTSKSSCYLEEEKAKTRSIPNIVKDDLYVRKLSPVMPNPGNAFDQFLPKCW
TPEDVNWKRIKRETYKPWYKEFQGFSQFLLLQALQTYSDDILSSETHTKIDPTSGPRLITRRKNLSYAPG
YRRDDLEMAALDPDLENDDFFVRKTGAFHANPYVLRAFEDFRKFSEQDDSVERDIILQCREGELVLPDLE
KDDMIVRRIPAQKKEVPLSGAPDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILVPSYRQ
KKDDMLTRKIQSWKLGTTVPPISFTPGPCSEADLKRWEAIREASRLRHKKRLMVERLFQKIYGENGSKSM
SDVSAEDVQNLRQLRYEEMQKIKSQLKEQDQKWQDDLAKWKDRRKSYTSDLQKKKEEREEIEKQALEKSK
RSSKTFKEMLQDRESQNQKSTVPSRRRMYSFDDVLEEGKRPPTMTVSEASYQSERVEEKGATYPSEIPKE
DSTTFAKREDRVTTEIQLPSQSPVEEQSPASLSSLRSRSTQMESTRVSASLPRSYRKTDTVRLTSVVTPR
PFGSQTRGISSLPRSYTMDDAWKYNGDVEDIKRTPNNVVSTPAPSPDASQLASSLSSQKEVAATEEDVTR
LPSPTSPFSSLSQDQAATSKATLSSTSGLDLMSESGEGEISPQREVSRSQDQFSDMRISINQTPGKSLDF
GFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG
KAGSPETKWIDATSGIYNSEKSSNLSVTTDFSESLQSSNIESKEINGIHDESNAFESKASESISLKNLKR
RSQFFEQGSSDSVVPDLPVPTISAPSRWVWDQEEERKRQERWQKEQDRLLQEKYQREQEKLREEWQRAKQ
EAERENSKYLDEELMVLSSNSMSLTTREPSLATWEATWSEGSKSSDREGTRAGEEERRQPQEEVVHEDQG
KKPQDQLVIERERKWEQQLQEEQEQKRLQAEAEEQKRPAEEQKRQAEIERETSVRIYQYRRPVDSYDIPK
TEEASSGFLPGDRNKSRSTTELDDYSTNKNGNNKYLDQIGNMTSSQRRSKKEQVPSGAELERQQILQEMR
KRTPLHNDNSWIRQRSASVNKEPVSLPGIMRRGESLDNLDSPRSNSWRQPPWLNQPTGFYASSSVQDFSR
PPPQLVSTSNRAYMRNPSSSVPPPSAGSVKTSTTGVATTQSPTPRSHSPSASQSGSQLRNSVLPVSVTSE
ALPQELKSGSETTNCTATTAISDSNLDGQPPCDVSLHTKALLQIEEEVVAAHVDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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