NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28925.1 Public Mus musculus 17 Tubb4a 23 108 98 CCDS HistoryNCBI Gene:22153Re-query CCDS DB by CCDS ID:28925.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071135.5 ENSMUSP00000071135.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071135.5Link to Ensembl Protein Viewer:ENSMUSP00000071135.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071135Re-query CCDS DB by Protein ID:ENSMUSP00000071135
Original member Current member NCBI NM_009451.4 NP_033477.2 Accepted alive Link to Nucleotide Sequence:NM_009451.4Link to Protein Sequence:NP_033477.2Re-query CCDS DB by Nucleotide ID:NM_009451Re-query CCDS DB by Protein ID:NP_033477Link to BLAST:NP_033477.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033477.2 444 Q9D6F9 444 100% 0 0

Chromosomal Locations for CCDS 28925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57080690 57081747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57085992 57086102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57086231 57086339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57087457 57087513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGCGGGAAATCGTGCACCTGCAAGCCGGTCAATGCGGTAACCAGATCGGGGCCAAGTTCTGGGAGGTCA
TCAGTGATGAGCACGGCATCGACCCCACTGGGACCTATCATGGGGACAGTGACCTCCAGCTGGAGAGGAT
CAATGTCTACTACAATGAGGCCACAGGTGGAAACTATGTTCCCAGAGCCGTGCTGGTCGACCTGGAACCC
GGCACCATGGACTCTGTCCGCTCCGGCCCTTTTGGCCAGATCTTTCGGCCAGACAACTTTGTATTTGGTC
AATCCGGAGCAGGCAACAACTGGGCCAAGGGTCACTACACCGAGGGCGCGGAGTTAGTGGATGCCGTCCT
GGACGTGGTGCGCAAAGAGGCGGAAAGCTGCGACTGTCTCCAGGGCTTCCAGCTCACCCACTCGCTCGGA
GGTGGCACCGGCTCAGGCATGGGGACCTTGCTCATCAGCAAGATCCGAGAGGAGTTTCCAGACAGGATCA
TGAATACGTTCAGCGTGGTGCCATCACCCAAGGTGTCTGACACGGTGGTGGAGCCCTACAATGCCACACT
GTCTGTGCATCAGCTGGTGGAGAACACTGATGAGACCTACTGCATCGACAACGAGGCCTTGTACGACATC
TGCTTCCGCACGCTCAAGCTGACCACGCCCACCTACGGGGACCTCAACCACCTCGTGTCAGCCACCATGA
GTGGAGTCACCACCTGCCTACGTTTCCCGGGCCAGCTCAATGCAGATCTACGCAAGCTGGCTGTGAATAT
GGTGCCATTCCCCCGTCTCCACTTCTTCATGCCAGGATTCGCACCCTTGACCAGCAGGGGCAGCCAGCAG
TACCGGGCCCTCACCGTTCCTGAGCTGACCCAACAGATGTTCGATGCTAAGAACATGATGGCTGCGTGTG
ACCCGAGACACGGTCGCTACCTGACTGTGGCTGCTGTCTTCCGGGGACGGATGTCCATGAAGGAGGTAGA
CGAGCAGATGTTAAGTGTGCAGAGCAAGAACAGCAGTTACTTCGTTGAGTGGATCCCCAACAATGTCAAG
ACAGCCGTATGTGACATCCCACCCCGGGGCCTGAAGATGGCAGCCACCTTCATCGGCAACAGCACTGCCA
TCCAGGAGCTGTTCAAGCGCATCTCGGAGCAGTTCACCGCCATGTTCAGACGCAAGGCCTTCCTGCACTG
GTACACGGGCGAAGGCATGGACGAGATGGAGTTTACGGAAGCAGAGAGCAATATGAACGACCTGGTGTCC
GAGTACCAGCAGTACCAGGATGCCACTGCTGAAGAGGGCGAGTTCGAAGAGGAGGCTGAAGAGGAGGTGG
CTTAA

Translation (444 aa):
MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEP
GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLG
GGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQ
YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVK
TAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATAEEGEFEEEAEEEVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH