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Report for CCDS38210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38210.1 Public Mus musculus 2 Vps39 23 108 98 CCDS HistoryNCBI Gene:269338Re-query CCDS DB by CCDS ID:38210.1Re-query CCDS DB by GeneID:269338See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102501.9 ENSMUSP00000099559.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102501.9Link to Ensembl Protein Viewer:ENSMUSP00000099559.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102501Re-query CCDS DB by Protein ID:ENSMUSP00000099559
Original member Current member NCBI NM_147153.4 NP_671495.1 Accepted alive Link to Nucleotide Sequence:NM_147153.4Link to Protein Sequence:NP_671495.1Re-query CCDS DB by Nucleotide ID:NM_147153Re-query CCDS DB by Protein ID:NP_671495Link to BLAST:NP_671495.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_671495.1 886 Q8R5L3-1 886 100% 0 0

Chromosomal Locations for CCDS 38210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120318034 120318109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120319466 120319557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120320652 120320786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120320887 120321036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120321610 120321655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120321858 120321960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120323033 120323161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120323583 120323700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120324191 120324289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120324631 120324704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120325186 120325272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120325386 120325527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120326006 120326149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120328573 120328715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120333390 120333519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120338466 120338586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120338681 120338801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120339319 120339502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120341984 120342076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120343193 120343291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120344125 120344219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120345618 120345660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120346328 120346392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120346857 120346889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120350164 120350229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120352915 120352987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2661 nt):
ATGCATGACGCTTTCGAGCCGGTGCCGATCCTGGAAAAGCTTCCCCTGCAGATCGACTGCCTGGCTGCCT
GGGAGGAATGGCTTCTTGTTGGAACCAAGCAAGGGCATCTTCTTCTCTACAGGATTCGGAAGGATGTTGT
GCCAGCAGATGTAGCCTCACCTGAAAGCGGCAGTTGTAACAGGTTTGAGGTAACACTAGAGAAGTCCAAT
AAGAACTTTTCCAAAAAGATCCAGCAGATCCATGTGGTTTCCCAGTTTAAGATTCTGGTCAGCTTGTTAG
AAAACAACATTTATGTCCATGACTTACTGACATTTCAACAAATCACTACAGTCTCAAAGGCCAAGGGCGC
ATCACTGTTCACCTGTGACCTCCAGCACACTGAGACGGGTGAGGAGGTGTTGCGGATGTGTGTGGCAGTG
AGGAAGAAGCTGCAGCTGTACTTCTGGAAGGACAGAGAATTCCACGAACTGCAGGGAGACTTTAGTGTGC
CAGATGTGCCCAAGTCCATGGCATGGTGTGAAAATTCTATCTGCGTTGGTTTCAAGAGAGACTATTACCT
GATCAGGGTGGATGGAAAGGGGTCCATCAAAGAGCTCTTCCCAACAGGAAAGCAGCTGGAGCCCTTAGTT
GCCCCTCTGGCAGATGGAAAAGTGGCTGTGGGTCAGGATGATCTGACTGTGGTGCTTAACGAGGAAGGCA
TCTGCACTCAGAAATGCGCCCTGAACTGGACAGACATCCCAGTGGCCATGGAGCACCAGCCTCCATACAT
TGTTGCAGTGTTGCCACGATACGTGGAGATCCGAACACTGGAACCAAGGCTTCTGGTCCAAAGCATTGAG
TTGCAAAGGCCTCGCTTCATTACATCAGGGGGATCAAACATTATCTATGTGGCCAGCAATCATTTTGTTT
GGAGACTCATTCCTGTCCCCATGGCAACCCAAATCCAACAGCTTCTCCAGGACAAGCAGTTTGAATTGGC
TCTGCAGCTCGCGGAGATGAAAGATGACTCAGACAGTGAAAAGCAGCAGCAGATCCATCACATTAAGAAC
TTGTATGCCTTCAACCTCTTCTGCCAGAAGCGCTTTGATGAGTCCATGCAGGTCTTTGCTAAACTTGGCA
CAGATCCCACCCATGTGATGGGCTTGTACCCCGACCTACTGCCCACGGACTACAGGAAGCAACTGCAGTA
CCCCAACCCGCTGCCCACACTCTCTGGTGCTGAACTGGAGAAGGCTCACTTAGCTCTCATTGACTACCTG
ACACAGAAACGGAGCCAGTTGGTAAAGAAGCTGAATGACTCGGATCACCAGTCCAGCACCTCCCCGCTCA
TGGAGGGCACTCCCACCATCAAGTCCAAGAAGAAGTTACTTCAGATCATTGACACCACTCTGCTCAAGTG
CTACCTCCATACAAATGTGGCCCTGGTGGCTCCCTTGCTGCGCCTGGAGAACAACCACTGTCATATCGAG
GAGAGTGAGCATGTGCTGAAGAAGGCTCACAAGTACAGCGAGCTGATCATCCTGTATGAGAAGAAGGGGC
TCCATGAGAAAGCTCTGCAGGTGCTAGTGGACCAGTCCAAGAAAGCAAACTCACCTTTGAAAGGCCACGA
GAGGACGGTGCAGTATCTGCAGCATTTAGGCACAGAAAACCTTCATCTGATTTTTTCCTACTCAGTCTGG
GTGCTGAGAGACTTCCCAGAAGATGGCCTGAAGATATTCACTGAAGACCTCCCGGAGGTAGAGTCTCTGC
CACGAGATCGAGTACTCAACTTCTTGATAGAGAATTTCAAGGCTCTAGCCATTCCTTATCTGGAACACAT
CATCCACGTGTGGGAGGAGACAGGCTCACAGTTCCACAATTGCCTGATCCAGCTGTACTGTGAGAAAGTG
CAGAGTCTGATGAAAGACTACCTTCTGTCGCTGCCCACAGGTAAAAGTCCAGTCCCTGCTGGAGAGGAAG
GAGGTGAACTGGGAGAATACCGACAGAAGCTGCTCATGTTCTTGGAGATTTCCAGCCACTATGATCCAGG
CCGGCTCATCTGTGATTTTCCCTTTGATGGCCTCTTAGAAGAGCGAGCTCTCCTGTTGGGGCGCATGGGG
AAGCACGAACAAGCTCTCTTCATCTATGTCCACGTCTTGAAGGACACAAAGATGGCTAAGGAGTACTGCC
ACAAACACTACGACCAAAACAAAGAAGGCAACAAAGATGTGTATCTGTCCCTGCTTCGGATGTACCTGTC
ACCTCCAAGCATTCACTGCCTGGGGCCAATCAAACTGGAGCTCCTGGAGCCACAGGCCAACCTCCAGGCT
GCCCTGCAAGTCCTAGAGCTGCACTACAGCAAATTAGACACCACCAAGGCAATCAACCTTCTGCCAGCAA
ACACTCAGATCAATGACATACGCATCTTTCTAGAAAAGGTCTTAGAAGAAAATGCACAAAAGAAACGGTT
CAATCAAGTGCTTAAGAATCTTCTCCATGCGGAGTTCCTCAGGGTTCAGGAAGAGCGAATTTTACACCAG
CAGGTGAAGTGCATCATCACTGAGGAGAAGGTGTGCATGGTATGCAAGAAGAAGATTGGGAACAGTGCAT
TTGCAAGATACCCCAATGGGGTGGTTGTGCACTACTTCTGCTCCAAAGAGGTAAACTCAGCCGACACCTG
A

Translation (886 aa):
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCNRFEVTLEKSN
KNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGEEVLRMCVAV
RKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLV
APLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIVAVLPRYVEIRTLEPRLLVQSIE
LQRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKN
LYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIE
ESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENLHLIFSYSVW
VLRDFPEDGLKIFTEDLPEVESLPRDRVLNFLIENFKALAIPYLEHIIHVWEETGSQFHNCLIQLYCEKV
QSLMKDYLLSLPTGKSPVPAGEEGGELGEYRQKLLMFLEISSHYDPGRLICDFPFDGLLEERALLLGRMG
KHEQALFIYVHVLKDTKMAKEYCHKHYDQNKEGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQA
ALQVLELHYSKLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNSADT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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