NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22371.1 Public Mus musculus 8 Uba52 23 108 98 CCDS HistoryNCBI Gene:22186Re-query CCDS DB by CCDS ID:22371.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081940.10 ENSMUSP00000080608.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081940.10Link to Ensembl Protein Viewer:ENSMUSP00000080608.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081940Re-query CCDS DB by Protein ID:ENSMUSP00000080608
Original member Current member EBI ENSMUST00000125184.7 ENSMUSP00000120096.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125184.7Link to Ensembl Protein Viewer:ENSMUSP00000120096.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125184Re-query CCDS DB by Protein ID:ENSMUSP00000120096
Original member Current member EBI ENSMUST00000129909.7 ENSMUSP00000121149.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129909.7Link to Ensembl Protein Viewer:ENSMUSP00000121149.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129909Re-query CCDS DB by Protein ID:ENSMUSP00000121149
Original member Current member EBI ENSMUST00000140679.7 ENSMUSP00000123263.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140679.7Link to Ensembl Protein Viewer:ENSMUSP00000123263.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140679Re-query CCDS DB by Protein ID:ENSMUSP00000123263
Original member Current member EBI ENSMUST00000135446.7 ENSMUSP00000123562.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135446.7Link to Ensembl Protein Viewer:ENSMUSP00000123562.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135446Re-query CCDS DB by Protein ID:ENSMUSP00000123562
Original member Current member EBI ENSMUST00000165126.8 ENSMUSP00000137461.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165126.8Link to Ensembl Protein Viewer:ENSMUSP00000137461.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165126Re-query CCDS DB by Protein ID:ENSMUSP00000137461
Original member Current member NCBI NM_001348227.1 NP_001335156.1 Accepted alive Link to Nucleotide Sequence:NM_001348227.1Link to Protein Sequence:NP_001335156.1Re-query CCDS DB by Nucleotide ID:NM_001348227Re-query CCDS DB by Protein ID:NP_001335156Link to BLAST:NP_001335156.1
Original member Current member NCBI NM_001348228.1 NP_001335157.1 Accepted alive Link to Nucleotide Sequence:NM_001348228.1Link to Protein Sequence:NP_001335157.1Re-query CCDS DB by Nucleotide ID:NM_001348228Re-query CCDS DB by Protein ID:NP_001335157Link to BLAST:NP_001335157.1
Original member Current member NCBI NM_001348229.1 NP_001335158.1 Accepted alive Link to Nucleotide Sequence:NM_001348229.1Link to Protein Sequence:NP_001335158.1Re-query CCDS DB by Nucleotide ID:NM_001348229Re-query CCDS DB by Protein ID:NP_001335158Link to BLAST:NP_001335158.1
Original member Current member NCBI NM_019883.4 NP_063936.1 Accepted alive Link to Nucleotide Sequence:NM_019883.4Link to Protein Sequence:NP_063936.1Re-query CCDS DB by Nucleotide ID:NM_019883Re-query CCDS DB by Protein ID:NP_063936Link to BLAST:NP_063936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335156.1 128 P62984 128 100% 0 0
NP_001335157.1 128 P62984 128 100% 0 0
NP_001335158.1 128 P62984 128 100% 0 0
NP_063936.1 128 P62984 128 100% 0 0

Chromosomal Locations for CCDS 22371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70508332 70508528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70509296 70509382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70509521 70509623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGACACCATCG
AGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGCAGAGGCTGATATTCGCGGG
CAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCTTGCACCTGGTG
CTGCGTCTGCGCGGTGGCATCATTGAGCCATCCCTTCGTCAGCTTGCCCAGAAGTACAACTGTGACAAGA
TGATCTGCCGCAAGTGCTACGCACGCCTGCACCCTCGTGCAGTCAACTGCCGCAAGAAGAAGTGCGGCCA
TACCAACAACCTGCGCCCCAAGAAGAAGGTCAAATAA

Translation (128 aa):
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
LRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH