NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6546.1 Public Homo sapiens 9 UBE2R2 24 110 108 CCDS HistoryNCBI Gene:54926Re-query CCDS DB by CCDS ID:6546.1Re-query CCDS DB by GeneID:54926See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6546.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263228.4 ENSP00000263228.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263228.4Link to Ensembl Protein Viewer:ENSP00000263228.3Re-query CCDS DB by Nucleotide ID:ENST00000263228Re-query CCDS DB by Protein ID:ENSP00000263228
Original member Current member NCBI NM_017811.4 NP_060281.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017811.4Link to Protein Sequence:NP_060281.2Re-query CCDS DB by Nucleotide ID:NM_017811Re-query CCDS DB by Protein ID:NP_060281Link to BLAST:NP_060281.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060281.2 238 Q712K3 238 100% 0 0

Chromosomal Locations for CCDS 6546.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 33817758 33817934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33886881 33886967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33900174 33900271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33911964 33912098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33917018 33917237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCCCAGCAGCAGATGACCAGCTCGCAGAAGGCCCTGATGCTCGAGCTGAAATCCCTGCAGGAGGAAC
CGGTGGAGGGCTTCCGGATCACCCTGGTGGACGAGTCCGACCTCTACAACTGGGAGGTGGCCATCTTCGG
ACCCCCCAACACCCTCTACGAAGGCGGCTACTTCAAGGCGCATATTAAATTTCCTATTGACTACCCCTAT
TCACCACCTACCTTCAGATTCTTGACCAAAATGTGGCACCCCAACATTTATGAGAATGGAGATGTATGCA
TTTCGATTCTTCATCCGCCTGTAGATGACCCACAGAGTGGAGAACTGCCTTCTGAAAGGTGGAATCCTAC
TCAGAATGTGAGGACTATCCTATTAAGTGTAATCTCACTGCTTAATGAGCCCAACACCTTCTCCCCAGCC
AATGTCGATGCTTCAGTTATGTTCAGGAAATGGAGAGACAGTAAAGGAAAAGACAAAGAATATGCTGAAA
TTATTAGGAAACAAGTTTCAGCCACTAAGGCCGAAGCAGAAAAGGATGGAGTGAAGGTCCCCACAACCCT
GGCGGAATACTGCATCAAAACTAAAGTGCCTTCCAATGACAACAGCTCAGATTTGCTTTACGACGACTTG
TATGATGACGACATTGATGATGAAGATGAGGAGGAGGAAGATGCCGACTGTTATGATGATGATGATTCTG
GGAATGAGGAGTCGTGA

Translation (238 aa):
MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPY
SPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPA
NVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKTKVPSNDNSSDLLYDDL
YDDDIDDEDEEEEDADCYDDDDSGNEES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH