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Report for CCDS47440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47440.1 Public Homo sapiens 6 GLYATL3 24 110 108 CCDS HistoryNCBI Gene:389396Re-query CCDS DB by CCDS ID:47440.1Re-query CCDS DB by GeneID:389396See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47440.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371197.9 ENSP00000360240.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371197.9Link to Ensembl Protein Viewer:ENSP00000360240.4Re-query CCDS DB by Nucleotide ID:ENST00000371197Re-query CCDS DB by Protein ID:ENSP00000360240
Original member Current member NCBI NM_001010904.2 NP_001010904.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010904.2Link to Protein Sequence:NP_001010904.1Re-query CCDS DB by Nucleotide ID:NM_001010904Re-query CCDS DB by Protein ID:NP_001010904Link to BLAST:NP_001010904.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010904.1 288 Q5SZD4 288 100% 0 0

Chromosomal Locations for CCDS 47440.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49511991 49512068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49515653 49515760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49517430 49517556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49521645 49521771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49526488 49526914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGTTGGTGCTAAACTGTTCTACCAAATTACTGATACTGGAGAAAATGTTGAAGAGTTGCTTTCCTGAAT
CACTCAAGGTTTACGGAGCGGTGATGAACATAAATCGTGGGAACCCCTTTCAAAAGGAAGTGGTGTTGGA
TTCATGGCCGGATTTCAAAGCTGTTATCACCCGACGACAAAGAGAGGCTGAGACAGATAACCTTGATCAT
TATACTAATGCCTATGCTGTGTTCTACAAGGATGTCAGGGCTTATCGACAGCTATTGGAAGAATGTGATG
TTTTTAACTGGGACCAAGTTTTTCAAATACAAGGGCTGCAGAGTGAGTTATATGATGTTTCCAAAGCGGT
TGCCAATTCAAAGCAGTTGAATATAAAGCTAACTTCCTTCAAGGCTGTTCATTTTTCTCCTGTTTCATCT
CTGCCAGATACCAGTTTCCTCAAGGGGCCTTCCCCACGACTAACCTACCTGAGTGTTGCCAATGCGGATC
TACTCAACCGGACTTGGTCCCGGGGAGGCAATGAACAATGTCTCCGGTACATCGCCAACCTCATCTCCTG
CTTCCCTAGTGTGTGTGTCCGGGATGAGAAGGGAAACCCGGTCTCCTGGTCCATCACAGACCAGTTTGCC
ACCATGTGCCATGGCTACACCCTGCCAGAACATCGCAGGAAAGGTTACAGCCGGCTGGTGGCCCTCACGC
TGGCCAGGAAGTTGCAAAGCCGGGGATTCCCCTCTCAGGGGAACGTCCTGGATGACAACACGGCGTCTAT
AAGCCTCCTGAAGAGTCTCCATGCTGAGTTCTTGCCTTGTCGCTTCCACAGGCTTATTCTCACCCCTGCG
ACTTTCTCTGGCCTGCCTCACCTCTAG

Translation (288 aa):
MLVLNCSTKLLILEKMLKSCFPESLKVYGAVMNINRGNPFQKEVVLDSWPDFKAVITRRQREAETDNLDH
YTNAYAVFYKDVRAYRQLLEECDVFNWDQVFQIQGLQSELYDVSKAVANSKQLNIKLTSFKAVHFSPVSS
LPDTSFLKGPSPRLTYLSVANADLLNRTWSRGGNEQCLRYIANLISCFPSVCVRDEKGNPVSWSITDQFA
TMCHGYTLPEHRRKGYSRLVALTLARKLQSRGFPSQGNVLDDNTASISLLKSLHAEFLPCRFHRLILTPA
TFSGLPHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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