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Report for CCDS27515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27515.1 Public Mus musculus 15 Kcnk9 23 108 98 CCDS HistoryNCBI Gene:223604Re-query CCDS DB by CCDS ID:27515.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27515.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044624.7 ENSMUSP00000038729.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044624.7Link to Ensembl Protein Viewer:ENSMUSP00000038729.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044624Re-query CCDS DB by Protein ID:ENSMUSP00000038729
Original member Current member NCBI NM_001033876.2 NP_001029048.1 Accepted alive Link to Nucleotide Sequence:NM_001033876.2Link to Protein Sequence:NP_001029048.1Re-query CCDS DB by Nucleotide ID:NM_001033876Re-query CCDS DB by Protein ID:NP_001029048Link to BLAST:NP_001029048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029048.1 402 Q3LS21 402 100% 0 0

Chromosomal Locations for CCDS 27515.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 72512119 72513044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72545997 72546279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGAAGCGGCAGAACGTGCGTACCCTGTCCTTGATCGCCTGTACCTTCACCTACCTGCTGGTCGGTGCCG
CGGTGTTCGACGCCCTCGAGTCGGACCATGAGATGCGCGAGGAGGAGAAACTTAAAGCCGAAGAAGTCCG
TCTCAGAGGCAAGTACAACATCAGCTCCGATGACTACCAGCAGCTGGAGCTGGTAATCCTGCAGTCTGAG
CCCCACCGCGCTGGTGTCCAGTGGAAATTCGCCGGTTCCTTCTACTTCGCCATCACTGTCATCACAACTA
TCGGATATGGACATGCTGCACCTGGAACTGATGCTGGCAAGGCCTTCTGTATGTTCTACGCTGTGCTGGG
TATCCCCCTGACGCTGGTTATGTTCCAGAGCCTGGGCGAGCGCATGAACACCTTCGTGCGCTACCTGCTG
AAACGTATCAAGAAGTGCTGTGGCATGCGCAACACTGAAGTTTCTATGGAGAACATGGTGACCGTCGGCT
TCTTTTCCTGCATGGGCACCCTGTGCCTTGGGGCGGCTGCCTTTTCCCAGTGTGAAGATTGGAGCTTCTT
CCATGCCTACTACTACTGCTTCATAACATTGACTACTATAGGGTTCGGCGATTTTGTGGCCCTGCAGGCC
AAGGGTGCGCTGCAGAGGAAGCCATTCTATGTGGCCTTCAGCTTCATGTATATCCTGGTGGGCCTGACCG
TCATCGGTGCCTTCCTCAATCTTGTGGTCCTGCGATTCCTGACCATGAATACCGATGAGGAGCTACTGGA
GGGAGAAGTTGCGGAGATTCTTGCTGGAAATCCAAGAAGAGTGTCTGTCCGTGCGCCTCAGAGACGCAAG
AGGCACCACGCCATGTACTTCCTCAGGAAATACGGCAGAACCCTGTGCTATCTCTGCTTCCCTGGTACCA
ACTGGGGTAAAGATGATGACGATGATGATGATGATGATGTCGTCGATAATGTTGTTGTTACTGCTCCTAT
TTCTGCTCCTGCGCCTGCTCCTGCTCCTGCGCCTGCTCCTGCTGCTGTGGCTGCTGGTGCCACTATCAGG
AGTGTCCGGGCTACCGTCCACACCGTTTCCTGCAGGGTTGAAGAGATCCCTCCAGACGTGCTGAGGAACA
CCTACTTCCGGTCCGTTTTCGGCGCCATTCCTCCTGGAATGCACACCTGCGGGGACCATAGGCTGCACCT
CCGTCGCAAGTCCATCTAA

Translation (402 aa):
MKRQNVRTLSLIACTFTYLLVGAAVFDALESDHEMREEEKLKAEEVRLRGKYNISSDDYQQLELVILQSE
PHRAGVQWKFAGSFYFAITVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVRYLL
KRIKKCCGMRNTEVSMENMVTVGFFSCMGTLCLGAAAFSQCEDWSFFHAYYYCFITLTTIGFGDFVALQA
KGALQRKPFYVAFSFMYILVGLTVIGAFLNLVVLRFLTMNTDEELLEGEVAEILAGNPRRVSVRAPQRRK
RHHAMYFLRKYGRTLCYLCFPGTNWGKDDDDDDDDDVVDNVVVTAPISAPAPAPAPAPAPAAVAAGATIR
SVRATVHTVSCRVEEIPPDVLRNTYFRSVFGAIPPGMHTCGDHRLHLRRKSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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