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Report for CCDS45225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45225.1 Public Homo sapiens 15 PHGR1 24 110 108 CCDS HistoryNCBI Gene:644844Re-query CCDS DB by CCDS ID:45225.1Re-query CCDS DB by GeneID:644844See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45225.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448599.2 ENSP00000410024.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000448599.2Link to Ensembl Protein Viewer:ENSP00000410024.2Re-query CCDS DB by Nucleotide ID:ENST00000448599Re-query CCDS DB by Protein ID:ENSP00000410024
Original member Current member NCBI NM_001145643.2 NP_001139115.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145643.2Link to Protein Sequence:NP_001139115.1Re-query CCDS DB by Nucleotide ID:NM_001145643Re-query CCDS DB by Protein ID:NP_001139115Link to BLAST:NP_001139115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139115.1 82 C9JFL3 82 100% 0 0

Chromosomal Locations for CCDS 45225.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 40353258 40353267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40354345 40354352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40356073 40356303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (249 nt):
ATGGACCCAGGTCCGAAGGGGCACTGCCACTGTGGGGGGCATGGCCATCCTCCAGGTCACTGCGGGCCAC
CCCCTGGCCATGGCCCAGGGCCCTGCGGGCCACCCCCCCACCATGGTCCAGGGCCCTGCGGGCCACCCCC
TGGCCATGGCCCAGGGCCCTGCGGGCCACCCCCCCACCATGGTCCAGGGCCCTGCGGGCCTCCCCCTGGC
CATGGCCCAGGTCACCCACCCCCTGGTCCACATCACTGA

Translation (82 aa):
MDPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPG
HGPGHPPPGPHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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