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Report for CCDS49979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49979.1 Public Mus musculus 17 Vmn2r102 23 108 98 CCDS HistoryNCBI Gene:224572Re-query CCDS DB by CCDS ID:49979.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171741.2 ENSMUSP00000126559.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171741.2Link to Ensembl Protein Viewer:ENSMUSP00000126559.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171741Re-query CCDS DB by Protein ID:ENSMUSP00000126559
Original member Current member NCBI NM_001104564.1 NP_001098034.1 Accepted alive Link to Nucleotide Sequence:NM_001104564.1Link to Protein Sequence:NP_001098034.1Re-query CCDS DB by Nucleotide ID:NM_001104564Re-query CCDS DB by Protein ID:NP_001098034Link to BLAST:NP_001098034.1

Chromosomal Locations for CCDS 49979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 19660399 19660616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19676611 19676905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19677238 19678029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19678703 19678918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19681134 19681257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19693820 19694748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2574 nt):
ATGTTGTCCTGGATGTTTTTCTTCAGGCTCTTGCAAATTCCCAAATTTGTCTCTGCTCTTACTTATAATA
TCAGTACATGTTATTACATAATCACTGAAGAATTTCACCATGAAGGAGATGTTGTGGTTGGTGCATTTTT
CCCTCTTCATACTTTCTACACTGAGAAGAAAATGCCACATAAAACTGTACCATATCAATATTTGGACAAT
CGAATACAGTATAACTTTAAGAATTACAAGTATATTCTCGCTCTGCAATTTGCAATTGAGGAGATCAATA
GGAATCCCAATCTGTTACCCAACACATCTCTTGGATTCGATTTCTACAATGTCAGATTCACTGAGAAGTA
CACTCTTGATAATGCTTTTATTTGGCTCACAGCTCTTGTGAATAGAAAGTATTTTCCTAATTACAATTGT
AAAAAGAGAAATTTCACTGCTGCACTCACAGGAACATCATGGATAACATCTGCCCAAATAGGGACATTGC
TTCAACTTTTTAAATTTCCACAGATTACCTTTGGACCTTATGATCCTTTATTAAGTGACCATGGTCAGTA
TCCATCTCTCTACCAGATGGCCCCTAAAGACACATCTCTTTCACTTGCCATTGTTTCATTGATAGCTCAT
TTTAGGTGGTCATGGGTTGGTCTCATACTCCCTGATGACCACAAAGGAAATAAGATTGTATCAGATTTTA
GGGAGGAGATGGAGAGAAAAGGCATCTGCCTAGCTTTTGTAAAAATGATCCCAGCCACATGGACTTCACA
TTTTGCCAAATTCTGGGAACATATGGATGAGACAAATGTAACAATTGTTTATGGTGATGTTGATTCACTA
GAAGGTGTAATAAGGAATATTGAACAAAGGTTATTGACACAGAATGTCTGGATCATGAACATTGAACATC
ATGTTATTGACAGAGCTGACTATTTCATGTTAGACACATTCCATGGAAGCCTAATTTTTAAGCACAGTTA
TAGAGAGAATTTTGAGTTTACCAAATTTATTAAAACAGTTAATCCTAAAAAATACCCAGAAGACATTTAT
CTTCCTAAGCTGTGGCATTTATTTTTCAAGTGCTCATTTGCTGACATTAATTGCAATGTTTTGGACAACT
GCCAAACCAATGCTTCCTTGGATGTATTCCCTCGTCACATATTTGATGTGGCCATGAATGAAGAGAGCTC
TAGTATTTACAATGGTGTGTATGCTGTGGCTCACAGCCTCCATGAGATGAGACTTCAGGAACTTCAAATG
CAACCATATGAAAATGGCAAAGGGATAGTGTTCTTTCCATGGCAGCTTAACAGATTCCTGAAGGACACTG
AAGTGAAAGACAAAAGGTGTTTAGATTGGAAACAGACAATAGATACAGAGTATGACATTCTTAACCTTTG
GAATTTACCAAAAGGCCTTGGATTGAAAGTGAAAATAGGATCATTTTCTGCAAATGCTCCACAGGGTCAA
CAGTTATCTTTATCTGAACAGATGATACAATGGCCAGAAATATTTTCAGAGATTCCTCAGTCTGTGTGCA
GTGAGAGTTGTGAGCCTGGATTCAGGAAAGTAACCTTGGAGGGCAAGGCCATCTGCTGCTACAAGTGCAC
TCCTTGTGGAGACAATGAGATTTCTAATGAGACAGATGTATACCAGTGTGTGAAGTGTCCAGAAGGTCAT
TTTGCAAATACAGAGAGGAACAACTGCTTCCAAAAATCTGTGATCTTTCTTGCCTATGAAGACCCCTTGG
GGATGGCTCTAGCCAGTATAGCTTTGTGCTTATCTTCACTCACAGTCTTTGTTATTGGCATCTTTGTGAA
ACACCGAGACACTCCGATTGTAAAGGCGAATAATCGAGCTCTCAGTTACATTTTGCTCCTCACACTCACA
TTCTGTTTCCTGTGTTCTTTGAACTTCATTGGTCAGCCAAACACAGCTACCTGCATCCTTCAGCAGACTA
CCTTTGCAGTTACTTTCACTATGGCTCTTGCCACTGTGTTGGCCAAAGCTATTACTGTGGTCCTTGCCTT
TAAGGTCAGTTTTCCAGGAAAAATAGTAAGATGGCTAATGTTATCAAGGGGTCCAAACTACATCATTCCT
ATCTGCACCCTGATCCAACTTCTCATCTGTGGAATATGGATGGCAACCTCTCCACCATTCATTGATGAAG
ATGCTCATACTGAATATGGACAGATCATCATTTTGTGCAATAAGGGCTCAGCTGTTGCCTTCCACTCTGT
CCTGGGATACCTCTGCTTTTTGGCCCTTGGGAGTTACACCATGGCCTTCTTGTCTAGAAATTTGCCTGAT
ACATTCAATGAATCCAAATATCTGTCATTCAGTATGCTGGTATTCTTTTGTGTCTGGGTTACCTTTCTTC
CTGTCTACCACAGCACTAAAGGGAAGATCATGGTGGCTATGGAAGTATTCTCTATCTTGGCTTCCAGCAC
AGCACTCCTTGCCTTCATATTTGGTCCCAAGTGTTACATTATCTTGTTGAGACCAGAGAACAATTCATTT
ACTCATATCCGGAAGAAAACATACTCTAGAAGGAAGAATTTTCCTAAAATATAG

Translation (857 aa):
MLSWMFFFRLLQIPKFVSALTYNISTCYYIITEEFHHEGDVVVGAFFPLHTFYTEKKMPHKTVPYQYLDN
RIQYNFKNYKYILALQFAIEEINRNPNLLPNTSLGFDFYNVRFTEKYTLDNAFIWLTALVNRKYFPNYNC
KKRNFTAALTGTSWITSAQIGTLLQLFKFPQITFGPYDPLLSDHGQYPSLYQMAPKDTSLSLAIVSLIAH
FRWSWVGLILPDDHKGNKIVSDFREEMERKGICLAFVKMIPATWTSHFAKFWEHMDETNVTIVYGDVDSL
EGVIRNIEQRLLTQNVWIMNIEHHVIDRADYFMLDTFHGSLIFKHSYRENFEFTKFIKTVNPKKYPEDIY
LPKLWHLFFKCSFADINCNVLDNCQTNASLDVFPRHIFDVAMNEESSSIYNGVYAVAHSLHEMRLQELQM
QPYENGKGIVFFPWQLNRFLKDTEVKDKRCLDWKQTIDTEYDILNLWNLPKGLGLKVKIGSFSANAPQGQ
QLSLSEQMIQWPEIFSEIPQSVCSESCEPGFRKVTLEGKAICCYKCTPCGDNEISNETDVYQCVKCPEGH
FANTERNNCFQKSVIFLAYEDPLGMALASIALCLSSLTVFVIGIFVKHRDTPIVKANNRALSYILLLTLT
FCFLCSLNFIGQPNTATCILQQTTFAVTFTMALATVLAKAITVVLAFKVSFPGKIVRWLMLSRGPNYIIP
ICTLIQLLICGIWMATSPPFIDEDAHTEYGQIIILCNKGSAVAFHSVLGYLCFLALGSYTMAFLSRNLPD
TFNESKYLSFSMLVFFCVWVTFLPVYHSTKGKIMVAMEVFSILASSTALLAFIFGPKCYIILLRPENNSF
THIRKKTYSRRKNFPKI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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