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Report for CCDS34438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34438.1 Public Homo sapiens 6 PNPLA1 24 110 108 CCDS HistoryNCBI Gene:285848Re-query CCDS DB by CCDS ID:34438.1Re-query CCDS DB by GeneID:285848See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000388715.7 ENSP00000373367.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000388715.7Link to Ensembl Protein Viewer:ENSP00000373367.3Re-query CCDS DB by Nucleotide ID:ENST00000388715Re-query CCDS DB by Protein ID:ENSP00000373367
Original member Current member NCBI NM_173676.2 NP_775947.2 Accepted alive Link to Nucleotide Sequence:NM_173676.2Link to Protein Sequence:NP_775947.2Re-query CCDS DB by Nucleotide ID:NM_173676Re-query CCDS DB by Protein ID:NP_775947Link to BLAST:NP_775947.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775947.2 437 Q8N8W4-2 437 100% 0 0

Chromosomal Locations for CCDS 34438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36291400 36291552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36293061 36293126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36294190 36294399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36295364 36295424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36301861 36302469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36306292 36306376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36307587 36307716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGTGCAGATGATGAGGCAGTTTCTGTACCGGGTCCTGCCCGAGGACTCCTACAAGGTCACCACGGGGA
AGCTCCATGTGAGCCTCACCCGCTTAACGGACGGGGAGAATGTGGTGGTTTCAGAGTTCACGTCCAAGGA
GGAGCTCATTGAGGCCCTATACTGCAGCTGCTTCGTCCCGGTGTACTGTGGCCTCATCCCCCCGACTTAC
CGCGGTGTGAGGTACATCGATGGGGGCTTCACGGGCATGCAGCCCTGTGCCTTCTGGACCGACGCCATCA
CCATCTCCACCTTCAGTGGGCAGCAGGACATCTGTCCCCGGGACTGCCCGGCCATCTTCCACGACTTCCG
CATGTTCAACTGCTCCTTCCAGTTCTCCCTGGAGAACATCGCCAGGATGACCCACGCATTGTTCCCCCCG
GACCTGGTGATCCTGCACGATTACTACTACCGAGGGTACGAGGATGCAGTTTTGTACTTGAGGCGGCTGA
ATGCTGTTTATCTTAATTCTTCCTCCAAGAGAGTGATTTTCCCCCGGGTGGAAGTGTACTGCCAGATAGA
ACTCGCCCTTGGCAATGAGTGCCCTGAACGCAGTCAACCAAGCCTTCGAGCACGGCAGGCCAGTCTGGAA
GGAGCCACACAACCTCACAAGGAGTGGGTTCCCAAAGGGGATGGAAGGGGCAGCCATGGTCCGCCTGTGT
CCCAACCTGTGCAGACACTTGAATTCACATGCGAGTCACCTGTTTCAGCACCAGTCTCTCCACTTGAGCA
GCCACCTGCACAGCCACTGGCCTCTTCAACTCCACTTTCTCTAAGTGGCATGCCACCTGTATCATTCCCA
GCTGTGCACAAGCCACCCAGCTCCACACCTGGTTCATCACTGCCCACCCCACCACCTGGACTGTCACCTC
TGTCACCTCAGCAGCAGGTACAACCGTCTGGATCACCAGCCAGATCCCTACACTCTCAGGCACCCACTTC
ACCCAGGCCATCCCTGGGGCCTTCAACTGTGGGGGCACCTCAAACACTGCCCCGAAGTTCTCTTTCAGCC
TTCCCTGCTCAGCCACCTGTGGAGGAACTAGGCCAAGAACAGCCCCAAGCTGTAGCTCTTCTTGTCTCTT
CAAAACCAAAAAGCGCCGTGCCTCTGGTTCATGTGAAGGAAACCGTCAGCAAGCCTTATGTAACGGAGAG
CCCTGCTGAAGACTCAAACTGGGTGAATAAGGTCTTCAAGAAGAACAAGCAAAAGACAAGTGGCACCAGA
AAAGGCTTCCCAAGACATTCGGGATCCAAAAAACCAAGCAGCAAAGTGCAGTGA

Translation (437 aa):
MVQMMRQFLYRVLPEDSYKVTTGKLHVSLTRLTDGENVVVSEFTSKEELIEALYCSCFVPVYCGLIPPTY
RGVRYIDGGFTGMQPCAFWTDAITISTFSGQQDICPRDCPAIFHDFRMFNCSFQFSLENIARMTHALFPP
DLVILHDYYYRGYEDAVLYLRRLNAVYLNSSSKRVIFPRVEVYCQIELALGNECPERSQPSLRARQASLE
GATQPHKEWVPKGDGRGSHGPPVSQPVQTLEFTCESPVSAPVSPLEQPPAQPLASSTPLSLSGMPPVSFP
AVHKPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGSPARSLHSQAPTSPRPSLGPSTVGAPQTLPRSSLSA
FPAQPPVEELGQEQPQAVALLVSSKPKSAVPLVHVKETVSKPYVTESPAEDSNWVNKVFKKNKQKTSGTR
KGFPRHSGSKKPSSKVQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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