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Report for CCDS37574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37574.1 Public Mus musculus 17 Vps52 23 108 98 CCDS HistoryNCBI Gene:224705Re-query CCDS DB by CCDS ID:37574.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025178.16 ENSMUSP00000025178.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025178.16Link to Ensembl Protein Viewer:ENSMUSP00000025178.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000025178Re-query CCDS DB by Protein ID:ENSMUSP00000025178
Original member Current member NCBI NM_172620.4 NP_766208.2 Accepted alive Link to Nucleotide Sequence:NM_172620.4Link to Protein Sequence:NP_766208.2Re-query CCDS DB by Nucleotide ID:NM_172620Re-query CCDS DB by Protein ID:NP_766208Link to BLAST:NP_766208.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766208.2 723 Q8C754-1 723 100% 0 0

Chromosomal Locations for CCDS 37574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33956093 33956182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33956930 33957014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33957849 33957901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33958017 33958092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33958290 33958357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33958601 33958776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33959225 33959375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33959995 33960095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33960187 33960319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33960447 33960504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33961111 33961244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33961613 33961768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33962067 33962185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33962423 33962546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33962726 33962821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33962910 33963017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33963178 33963243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33965281 33965392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33965661 33965779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33965959 33966105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGGCAGCCGCAGCGACCATGGCGGCCGCTGCCCGGGAGCTGGTGTTGCGGGCTGGGGCCTCAGATGTAG
AGGAGGAGGAGGGCCCGCTGGGGGGGGGTTCTGGACTCCAAGAACCCCTACAACTTGGAGAGTTGGACAT
CACCTCTGATGAATTCATCTTGGATGAAGTGGATGTTCACATCCAGGCAAACCTGGAGGATGAGTTAGTG
AAGGAAGCTCTCAAAACGGGTGTGGATCTTCGACACTATTCAAAGCAGGTGGAGCTGGAGCTGCAGCAGA
TTGAGCAGAAGTCAATCCGGGACTATATCCAAGAGAGTGAAAACATAGCGTCTCTGCACAATCAGATCAC
GGCCTGTGACGCCGTCCTGGAGCGCATGGAACAGATGCTGGGAGCTTTTCAGAGCGATCTCAGCTCCATC
AGCTCTGAGATCCGAACCCTGCAGGAGCAGTCGGGGGCCATGAACATCCGACTTCGTAACCGACAGGCAG
TTCGGGGGAAACTTGGGGAACTTGTGGATGGGCTGGTGGTGCCCTCTGCTCTGGTCACAGCAATTCTGGA
AGCTCCAGTGACCGAGCCCAGGTTCCTGGAGCAGCTACAGGAGCTGGATGCCAAGGCAGCCGCGGTGAGA
GAGCAGGAGGCTATGGGCACCGCTGCCTGTGCTGACGTCAGAGGCGTGCTGGACCGGCTCCGGGTCAAGG
CAGTGACGAAGATCCGGGAGTTTATTCTCCAGAAGATCTACTCCTTCAGAAAGCCCATGACCAACTACCA
GATCCCCCAGGCGGCCCTGCTGAAGTACAGGTTTTTCTATCAGTTCCTGCTGGGTAATGAGCGTGCTACA
GCCAAGGAGATCAGGGATGAGTACGTAGAGACGCTGAGCAAGATCTACCTGTCCTACTACCGATCCTATG
TGGGGCGGCTCATGAAAGTGCAGTACGAGGAAGTTGCTGAGAAAGACGACCTAATGGGTGTTGAAGACAC
AGCAAAGAAAGGCTTCTTCTCGAAGCCGTCCCTCCGAAGCAGGAACACCATCTTTACCCTTGGCACTCGT
GGTACTGTCATCTCACCGGCCGAGCTGGAGGCCCCCATCCTAGTGCCCCATACTGCCCAACGTGGAGAGC
AGAGGTATCCATTCGAAGCGCTCTTCCGCAGCCAGCACTATGCCCTCCTCGACAATTCTTGCCGTGAATA
TCTTTTCATCTGTGAATTTTTCATCGTGTCTGGCCCGGCTGCACATGACCTGTTCCACGCCGTCATGGGC
CGCACGCTCTCCATGACGCTGAAACACCTGGAGTCCTACCTGGCTGACTGCTACGATGCCATTGCTGTTT
TTCTCTGTATCCACATTGTTCTCCGGTTCCGCAACATTGCAGCGAAGAGGGACGTCCCTGCCCTGGACAG
GTACTGGGAGCAGGTGCTTGCCTTGCTGTGGCCTCGGTTTGAGCTGATCCTGGAGATGAATGTCCAGAGT
GTCCGCAGCACTGACCCCCAGCGCCTTGGGGGACTGGACACTCGGCCCCACTATATCACACGCCGCTATG
CTGAGTTCTCCTCTGCACTTGTCAGCATCAACCAGACGATCCCCAATGAACGCACGCTGCAGCTCCTGGG
ACAGCTCCAGGTGGAGGTGGAGAATTTTGTCCTCCGAGTGGCTGCAGAGTTCTCCTCCAGGAAGGAGCAG
CTTGTGTTTCTGATCAACAACTATGACATGATGCTCGGGGTGCTGATGGAGCGGGCTGCTGATGACAGCA
AAGAGGTGGAAAGTTTCCAGCAGCTGCTCAATGCTCGGACACAGGAGTTCATTGAGGAGCTGCTGTCTCC
CCCCTTCGGGGGTCTGGTGGCATTCGTGAAGGAGGCTGAAGCCTTGATTGAGCGTGGGCAGGCTGAGCGG
CTCCGAGGGGAGGAAGCCCGAGTCACTCAGCTGATCCGTGGCTTTGGTAGTTCCTGGAAGGCATCAGTGG
AGTCCCTGAGTCAGGATGTAATGCGAAGTTTTACCAACTTCCGAAATGGAACCAGCATCATCCAGGGGGC
GCTGACCCAGCTGATCCAGCTCTACCATCGCTTCCACCGGGTGCTGTCTCAGCCCCAGCTCCGCGCACTC
CCGGCCAGGGCCGAGCTCATCAACATCCATCACCTCATGGTGGAGCTGAAGAAACACAAGCCGAACTTCT
GA

Translation (723 aa):
MAAAATMAAAARELVLRAGASDVEEEEGPLGGGSGLQEPLQLGELDITSDEFILDEVDVHIQANLEDELV
KEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLERMEQMLGAFQSDLSSI
SSEIRTLQEQSGAMNIRLRNRQAVRGKLGELVDGLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVR
EQEAMGTAACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQAALLKYRFFYQFLLGNERAT
AKEIRDEYVETLSKIYLSYYRSYVGRLMKVQYEEVAEKDDLMGVEDTAKKGFFSKPSLRSRNTIFTLGTR
GTVISPAELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFICEFFIVSGPAAHDLFHAVMG
RTLSMTLKHLESYLADCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQS
VRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTLQLLGQLQVEVENFVLRVAAEFSSRKEQ
LVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEALIERGQAER
LRGEEARVTQLIRGFGSSWKASVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRAL
PARAELINIHHLMVELKKHKPNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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