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Report for CCDS35774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35774.1 Public Mus musculus 1 Usp21 23 108 98 CCDS HistoryNCBI Gene:30941Re-query CCDS DB by CCDS ID:35774.1Re-query CCDS DB by GeneID:30941See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35774.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065941.11 ENSMUSP00000064002.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065941.11Link to Ensembl Protein Viewer:ENSMUSP00000064002.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065941Re-query CCDS DB by Protein ID:ENSMUSP00000064002
Original member Current member EBI ENSMUST00000111305.7 ENSMUSP00000106936.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111305.7Link to Ensembl Protein Viewer:ENSMUSP00000106936.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111305Re-query CCDS DB by Protein ID:ENSMUSP00000106936
Original member Current member NCBI NM_013919.4 NP_038947.2 Accepted alive Link to Nucleotide Sequence:NM_013919.4Link to Protein Sequence:NP_038947.2Re-query CCDS DB by Nucleotide ID:NM_013919Re-query CCDS DB by Protein ID:NP_038947Link to BLAST:NP_038947.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038947.2 566 Q9QZL6 566 99.8233% 0 1

Chromosomal Locations for CCDS 35774.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171282212 171282302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171282497 171282611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171282695 171282802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171283015 171283093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171283355 171283441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171283638 171283741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171283962 171284026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171284578 171284736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171284927 171285038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171285255 171285375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171285542 171285601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171286350 171286949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGCCCCAGGCTTCTGAGCACCGCCTGGGCCGGACTCGAGAGCCACCTGTCAATGTACAGCCCCGAGTGG
GAGCCAAGATACCATTTCCTCCCCGGGCACGCAGCAAGGAGCGCCGAAACCCAGTTCCTGGGCCAAACTC
CATGTTACGACCTTTGCCTCCCAGGCCAGGTCCCCCAGATGAAAGGCTCAAGAAACTGGAGCTGGGTCGG
GGTCGGACCTCAGGCTCTCGTCCTAGAGGTCCCCTTCGAGCAGATCATGGGGTTCCCCTGCCTGGCTCAC
CGCCCCCAGCTGTGGCTCTGCCTCTCCCATCCCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAGTGG
GGACTTGCGTCCAATGGGGATTGCCTTGGGAGGGCACCGTGGCGCTGGCGAGCTAGGGGCTGCACTGAGC
CGCTTGGCACTCCGGCCTGAGCCACCCACTTTGAGACGTAGTACTTCTCTCCGGCGTCTTGGGGGCTTCC
CTGGCCCCCCTACCCTGCTCAGCATACGGACAGAGCCCCCTACTTCCCATGGCTCCTTCCACATGATATC
TGCCCGGCCTTCTGAGCCTTTCTACTCTGATGACAAGATGGCTCACCACACACTGCTTCTGGGCTCTGGT
CATGTTGGCCTCCGAAATCTAGGAAATACATGCTTCCTGAATGCCGTGCTACAGTGTTTGAGCAGCACAA
GGCCTCTTCGAGACTTCTGTCTGCGAAGGGACTTCCGGCAAGAGGTGCCCGGAGGAGGCCGAGCCCAGGA
ACTCACAGAAGCCTTTGCAGATGTGATTGGTGCCCTCTGGCACCCTGACTCCTGTGAAGCTGTGAATCCC
ACCCGATTCCGGGCTGTCTTCCAGAAATACGTCCCTTCCTTCTCTGGATACAGCCAGCAGGATGCCCAAG
AGTTCCTGAAGCTCCTCATGGAGCGGTTGCACCTTGAGATCAACCGACGAGGGCGCCGGGCACCGCCAAT
CTTGGCCAGCGGACCAGTTCCCTCTCCACCTTGCCGAGGAGGAGGGGCTCTGCATGAAGAACCTGAGTTG
AGTGATGATGACCGAGCCAACTTAATGTGGAAGCGCTACCTGGAGCGAGAAGACAGCAAGATTGTGGACC
TGTTTGTGGGCCAGTTGAAAAGTTGCCTCAAGTGCCAGGCCTGTGGGTATCGCTCCACGACCTTCGAGGT
TTTTTGTGACCTGTCCCTGCCCATCCCCAAGAAAGGATTTGCTGGGGGCAAAGTGTCTTTGCGGGATTGC
TTCAGCCTTTTCACCAAGGAGGAAGAGCTAGAGTCGGAGAATGCCCCAGTGTGTGACCGATGTCGGCAGA
AAACCCGAAGTACCAAAAAGTTGACAGTACAAAGATTCCCCCGAATCCTCGTGCTCCATCTGAACCGATT
TTCCACCTCCCGAGGCTCCATCAAGAAAAGTTCAGTAGGTGTAGACTTCCCACTGCAGAGACTAAGCCTA
GGGGACTTTGCCAGCGACAAAGCGGGAAGCCCTGTCTACCAGCTGTATGCCCTTTGCAACCACTCGGGTA
GTGTCCACTATGGCCACTACACAGCCCTGTGCCGGTGCCAGACTGGTTGGCATGTCTACAATGACTCCCG
CGTTTCCCCTGTCAGTGAAAATCAGGTGGCATCCAGTGAGGGCTACGTGCTGTTCTACCAATTGATGCAG
GAACCACTTCGGTGCCTGTGA

Translation (566 aa):
MPQASEHRLGRTREPPVNVQPRVGAKIPFPPRARSKERRNPVPGPNSMLRPLPPRPGPPDERLKKLELGR
GRTSGSRPRGPLRADHGVPLPGSPPPAVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGAGELGAALS
RLALRPEPPTLRRSTSLRRLGGFPGPPTLLSIRTEPPTSHGSFHMISARPSEPFYSDDKMAHHTLLLGSG
HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNP
TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILASGPVPSPPCRGGGALHEEPEL
SDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDC
FSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSL
GDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQ
EPLRCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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