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Report for CCDS15507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15507.1 Public Mus musculus 1 Ncstn 23 108 98 CCDS HistoryNCBI Gene:59287Re-query CCDS DB by CCDS ID:15507.1Re-query CCDS DB by GeneID:59287See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15507.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003550.10 ENSMUSP00000003550.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003550.10Link to Ensembl Protein Viewer:ENSMUSP00000003550.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000003550Re-query CCDS DB by Protein ID:ENSMUSP00000003550
Original member Current member NCBI NM_021607.3 NP_067620.3 Accepted alive Link to Nucleotide Sequence:NM_021607.3Link to Protein Sequence:NP_067620.3Re-query CCDS DB by Nucleotide ID:NM_021607Re-query CCDS DB by Protein ID:NP_067620Link to BLAST:NP_067620.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067620.3 708 P57716 708 100% 0 0

Chromosomal Locations for CCDS 15507.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172066674 172066796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172067331 172067543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172067789 172067943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172068186 172068273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172068562 172068657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172068762 172068864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172069976 172070148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172071251 172071328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172071465 172071569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172072121 172072273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172072466 172072575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172072777 172072927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172074273 172074418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172074915 172075036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172075405 172075528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172081212 172081316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172082601 172082682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGGCTACGACTAGGGGCGGCTCTGGGCCTGACCCAGGAAGTCGGGGTCTTCTTCTTCTGTCTTTTTCCG
TGGTACTGGCAGGATTGTGTGGGGGAAACTCAGTGGAGAGGAAAATCTACATTCCCTTAAATAAAACAGC
TCCTTGTGTCCGCCTGCTCAACGCCACTCATCAGATTGGCTGCCAGTCTTCAATTAGTGGGGATACAGGG
GTTATCCATGTAGTGGAGAAAGAAGAAGACCTGAAGTGGGTGTTGACCGATGGCCCCAACCCCCCTTACA
TGGTTCTGCTGGAGGGCAAGCTCTTCACCAGAGATGTAATGGAGAAGCTGAAGGGAACAACCAGTAGAAT
CGCTGGTCTTGCCGTGACTCTAGCCAAGCCCAACTCAACTTCAAGCTTCTCTCCTAGTGTGCAGTGCCCA
AATGATGGGTTTGGTATTTACTCCAACTCCTACGGGCCAGAGTTTGCTCACTGCAAGAAAACACTGTGGA
ATGAACTGGGCAACGGCTTGGCTTATGAAGACTTTAGTTTCCCCATCTTTCTTCTTGAAGATGAGAACGA
AACCAAGGTCATCAAGCAGTGCTATCAAGATCACAACCTGGGTCAGAATGGCTCTGCACCAAGCTTCCCA
TTGTGTGCTATGCAGCTCTTCTCACACATGCACGCCGTCATCAGCACTGCCACCTGCATGCGGCGCAGCT
TCATCCAGAGCACCTTCAGCATCAACCCAGAAATCGTCTGTGACCCCTTATCCGACTACAACGTATGGAG
CATGCTTAAGCCTATAAATACATCTGTGGGACTAGAACCTGACGTCAGGGTTGTGGTTGCGGCCACACGG
CTGGATAGCCGGTCCTTTTTCTGGAATGTGGCCCCAGGGGCTGAAAGTGCTGTAGCCTCCTTTGTCACTC
AGCTGGCTGCAGCTGAAGCTTTGCACAAGGCACCTGATGTGACCACTCTATCCCGAAATGTGATGTTTGT
CTTCTTCCAGGGGGAAACTTTTGACTACATTGGCAGCTCACGGATGGTCTATGATATGGAGAACGGCAAG
TTTCCCGTGCGGCTCGAGAACATTGACTCCTTCGTGGAGCTGGGACAGGTGGCCCTAAGAACTTCACTAG
ATCTCTGGATGCACACAGATCCCATGTCTCAGAAAAATGAGTCTGTGAAAAACCAGGTGGAGGATCTTCT
GGCCACTCTGGAGAAGAGCGGTGCTGGTGTCCCTGAAGTTGTCCTGAGGAGACTGGCCCAGTCCCAGGCC
CTTCCACCTTCGTCTCTACAACGATTTCTTCGGGCTCGAAACATCTCTGGCGTGGTCCTGGCTGACCACT
CTGGCTCCTTCCACAATCGGTATTACCAGAGCATTTATGACACGGCTGAGAACATTAATGTGACCTATCC
TGAGTGGCAGAGCCCAGAAGAGGACCTCAACTTTGTGACAGACACTGCCAAGGCACTGGCGAATGTGGCC
ACAGTGCTGGCGCGTGCACTGTATGAGCTTGCAGGAGGAACCAACTTCAGCAGCTCCATCCAGGCTGATC
CCCAGACAGTTACACGTCTGCTCTATGGGTTCCTGGTTAGAGCTAACAACTCATGGTTTCAGTCGATCTT
GAAACATGACCTAAGGTCCTATTTGGATGACAGGCCTCTTCAACACTACATCGCCGTCTCCAGCCCTACC
AACACGACTTACGTTGTGCAGTACGCCTTGGCAAACCTGACTGGCAAGGCGACCAACCTCACCCGAGAGC
AGTGCCAGGATCCAAGTAAAGTCCCAAATGAGAGCAAGGATTTATATGAATACTCGTGGGTACAAGGCCC
TTGGAATTCCAACAGGACAGAGAGGCTCCCACAGTGTGTGCGCTCCACAGTGCGACTGGCCAGGGCCTTG
TCCCCTGCCTTTGAACTGAGTCAGTGGAGCTCCACAGAATACTCTACGTGGGCGGAGAGCCGCTGGAAAG
ACATCCAAGCTCGGATATTCCTAATTGCCAGCAAAGAGCTTGAGTTCATCACGCTGATCGTGGGCTTCAG
CACCCTTGTCTTCTCCCTCATCGTCACCTACTGCATCAATGCCAAAGCCGACGTCCTTTTCGTTGCTCCC
CGAGAGCCAGGAGCTGTGTCTTACTGA

Translation (708 aa):
MATTRGGSGPDPGSRGLLLLSFSVVLAGLCGGNSVERKIYIPLNKTAPCVRLLNATHQIGCQSSISGDTG
VIHVVEKEEDLKWVLTDGPNPPYMVLLEGKLFTRDVMEKLKGTTSRIAGLAVTLAKPNSTSSFSPSVQCP
NDGFGIYSNSYGPEFAHCKKTLWNELGNGLAYEDFSFPIFLLEDENETKVIKQCYQDHNLGQNGSAPSFP
LCAMQLFSHMHAVISTATCMRRSFIQSTFSINPEIVCDPLSDYNVWSMLKPINTSVGLEPDVRVVVAATR
LDSRSFFWNVAPGAESAVASFVTQLAAAEALHKAPDVTTLSRNVMFVFFQGETFDYIGSSRMVYDMENGK
FPVRLENIDSFVELGQVALRTSLDLWMHTDPMSQKNESVKNQVEDLLATLEKSGAGVPEVVLRRLAQSQA
LPPSSLQRFLRARNISGVVLADHSGSFHNRYYQSIYDTAENINVTYPEWQSPEEDLNFVTDTAKALANVA
TVLARALYELAGGTNFSSSIQADPQTVTRLLYGFLVRANNSWFQSILKHDLRSYLDDRPLQHYIAVSSPT
NTTYVVQYALANLTGKATNLTREQCQDPSKVPNESKDLYEYSWVQGPWNSNRTERLPQCVRSTVRLARAL
SPAFELSQWSSTEYSTWAESRWKDIQARIFLIASKELEFITLIVGFSTLVFSLIVTYCINAKADVLFVAP
REPGAVSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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