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Report for CCDS50152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50152.1 Public Mus musculus 17 Safb 23 108 98 CCDS HistoryNCBI Gene:224903Re-query CCDS DB by CCDS ID:50152.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50152.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095224.10 ENSMUSP00000092849.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095224.10Link to Ensembl Protein Viewer:ENSMUSP00000092849.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095224Re-query CCDS DB by Protein ID:ENSMUSP00000092849
Original member Current member NCBI NM_001163300.1 NP_001156772.1 Accepted alive Link to Nucleotide Sequence:NM_001163300.1Link to Protein Sequence:NP_001156772.1Re-query CCDS DB by Nucleotide ID:NM_001163300Re-query CCDS DB by Protein ID:NP_001156772Link to BLAST:NP_001156772.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156772.1 937 D3YXK2 937 100% 0 0

Chromosomal Locations for CCDS 50152.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56585162 56585350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56588782 56588866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56593690 56593754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56593835 56594041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56595652 56595714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56597788 56597815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56598644 56599220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56599623 56599672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56600338 56600432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56600822 56600971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56601048 56601130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56601227 56601366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56601443 56601531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56602877 56602983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56603532 56603822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56604146 56604283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56604366 56604408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56605284 56605399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56605557 56605657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56605797 56605863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56605976 56606105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2814 nt):
ATGGCGGAGACTCTGTCGGGTTTAGGAGACGCGAGTGCGGCGGGCGCGGCGGCCGTGAGCTCCGCGGCGT
CAGAGACCGGGACGCGGCGGCTCAGCGACCTGCGGGTGATCGACCTGCGGGCGGAGCTGAAGAAGCGGAA
CCTCGACTCGAGCGGCAACAAGAGCGTGCTGATGGAGCGGCTGAAGAAGGCCATTGAAGATGAAGGTGGG
AATCCTGATGAAATTGAAGTCACCTCAGAATGCAACAAGAAGATGCCTAAGAGGCCCAGCAAAGGGAGGA
AACCAGAAGACGAGGGTGTGGAGGACAACGGGCTCGAGGAGAATTCTGGGGATGGGCAGGAGGATGTGGA
GACCAGCCTGGAGAACCTGCAAGACATGGATATGATGGACATCAGTGTGCTGGATGAGGCTGACATTGAC
AATGGCAGCGTGGCAGACTGTGTGGAGGAAGAGGAGGAGGCCACACTCCCTGAGGGCCTAGCAGACAGCA
CTGAACTGGTAGAAGGAGATTTGAAAGGGCTCCCAGAACAGCTGCAGGAGCATGCTATAGATGACAAGGA
CACCGTTAACAATGTAGATACGTCATCATCTGACTTCACCATGCTGCAGGAGATGGAAGAGGCATCTTTG
GAGCCAGAAAATGAGAAAATACTCGACATTTTGGGGGAAACTTGTAAATCTGAGCCAGTAAAAGAAGAAG
GTTCGGAGCTGGAGCAGCCCTTTGCCCAGGCCACGAGTAGCGTGGGGCCAGACAGGAAGCTGGCGGAGGA
AGAGGACCTATTTGAGAGCTGCGGCCACCCGGAAGAGGAAGAGGAAGAGGAGGAAGAAGATCAGGAAGAG
GAGCAGGAGGAGGAGGGAGATTTAGCTTTGGCCAGCAGCAGCAAGTCTGAGTCTCCAAGCACTCGGTGTC
AGTGGAGCGAGGCAGATGCCCCGTTAGCAGTAGTGAAAAGGGAGCCGGCAGATGCGCCTGGCGGAGGCAC
TGGGATGGACCGCGAGCCTGTAGGGCTAGAGGAGCCAGTTGAACAGAGTAGCACGGCTGCCCAGCTCCCG
GAGGCCACCAGCCAGGAGCTGGTGCGAGCGCCCACGGCAGCCCTGAGCCCTGAGCCCCAAGATAGCAAAG
AAGACGTGAAGAAGTTTGCTTTTGACGCTTGTAATGACGTCCCTGCGCCTCCTAAAGAGTCCTCAGCCAG
TGAGGGCGCTGATCAGAAAATGAGTTCTGTGGAGGAGGACTCGGATACAAAAAGGCTTTCCCGAGAAGAG
AAGGGTCGCAGCAGCTGTGGTAGGAATTTCTGGGTTAGTGGCCTTTCGTCTACAACCAGAGCCACGGATC
TGAAGAACCTGTTTAGCAGATATGGGAAGGTGGTGGGTGCTAAGGTTGTGACGAACGCCCGGAGTCCTGG
AGCTCGCTGTTATGGCTTTGTCACTATGTCCACAGCTGAAGAGGCAACAAAATGCATTAGCCATTTGCAC
AAGACTGAGCTGCATGGCAAGATGATCTCAGTGGAAAAGGCCAAAAGTGAGCCCACTGGCAAAAGAGTGC
CTGACAGGCGAGATGGGGACAGCAAGAAGGAGAAGGCCAGCACCAGTGACAGATCTGCAAACCTTAAGAG
GGAGGAGAAAGGTGAGAGAAAAGACGATGCCAAGAAGACAGATGATGGGAGCACAGAGAAGAGCAAAGAC
GCAGATGACCAGAAACCTGGGCCTTCAGAGCGCTCGCGAACGACCAAGTCAGGAAGCCGTGGCACTGAGC
GCACTGTGGTGATGGACAAGTCCAAAGGTGTGCCTGTCATCAGTGTGAAAACATCTGGGTCTAAAGAGAG
AGCCTCCAAAAGTCAGGACCGGAAGTCAGCCAGCCGGGAGAAGCGGTCTGTTGTGTCCTTTGACAAAGTT
AAAGAGTCTCGAAAGTCCAGAGACTCAGAGTCTCGGAGGGAACGGGAGCGCAGTGAGCGGGAGCAGAGGC
TGCAGGCCCAGTGGGAGCGGGAGGAGCGAGAGCGGCTGGAGATTGCTCGTGAGCGCTTGGCATTCCACCG
CCATCGGCTAGAGCGTGAACGCATGGAGCGGGAGCGGCTGGAGCGGGAGCGGATGCATGTAGAACAGGAG
CGGAGGCGTGAGCAAGAGCGCATTCACCGAGAGCGAGAGGAGCTTCGGCGTCAGCAGGAGCTGCGCTATG
AACAGGAGCGCCGGCCTGCTGTGCGCAGGCCCTATGAAGTGGATGGCCGGCGAGATGATGCCTATTGGCC
AGAAGCTAAACGGGCTGCTCTGGATGACCGTTACCACTCAGACTTCAGCCGCCAGGACCGCTTTCACGAC
TTCGACCACAGAGACAGAGGCCGTTATCCCAACCATTCTGTGGATAGGAGAGAAGGTTCACGGTCGATGA
TGGGAGACAGAGAAGGACAGCATTACCCTGAACGCCATGGAGGACCTGAACGCCATGGCCGGGACTCTCG
AGATGGCTGGGGCTATGGTTCGAACAAGAGATTGAGTGAAGGCCGGGGGCTGCCCCCTCCTCCCAGGCGT
GACTGGGGGGAGCATGGCCGGCGACTTGAAGATGACCGGGCATGGCAGGGCACGGCTGATGGAGGCATGA
TGGAGCGTGATCATAAGAGGTGGCAAGGTGGTGAGAGGAGCATGTCTGGCCACTCGGGGCCTGGTCACAT
GATGAACCGTGGTGGCATGTCAGGGCGAGGCAGTTTTGCCCCAGGAGGAGCTTCTCGTGGCCATGTGATC
CCACGTGGAGGGATGCAGGCAGGCTTTGGAGGACAGAGCCGGGGAAGCAGACCCAGTGATGCCCGCTTCA
CCCGCCGCTATTGA

Translation (937 aa):
MAETLSGLGDASAAGAAAVSSAASETGTRRLSDLRVIDLRAELKKRNLDSSGNKSVLMERLKKAIEDEGG
NPDEIEVTSECNKKMPKRPSKGRKPEDEGVEDNGLEENSGDGQEDVETSLENLQDMDMMDISVLDEADID
NGSVADCVEEEEEATLPEGLADSTELVEGDLKGLPEQLQEHAIDDKDTVNNVDTSSSDFTMLQEMEEASL
EPENEKILDILGETCKSEPVKEEGSELEQPFAQATSSVGPDRKLAEEEDLFESCGHPEEEEEEEEEDQEE
EQEEEGDLALASSSKSESPSTRCQWSEADAPLAVVKREPADAPGGGTGMDREPVGLEEPVEQSSTAAQLP
EATSQELVRAPTAALSPEPQDSKEDVKKFAFDACNDVPAPPKESSASEGADQKMSSVEEDSDTKRLSREE
KGRSSCGRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCISHLH
KTELHGKMISVEKAKSEPTGKRVPDRRDGDSKKEKASTSDRSANLKREEKGERKDDAKKTDDGSTEKSKD
ADDQKPGPSERSRTTKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSASREKRSVVSFDKV
KESRKSRDSESRRERERSEREQRLQAQWEREERERLEIARERLAFHRHRLERERMERERLERERMHVEQE
RRREQERIHREREELRRQQELRYEQERRPAVRRPYEVDGRRDDAYWPEAKRAALDDRYHSDFSRQDRFHD
FDHRDRGRYPNHSVDRREGSRSMMGDREGQHYPERHGGPERHGRDSRDGWGYGSNKRLSEGRGLPPPPRR
DWGEHGRRLEDDRAWQGTADGGMMERDHKRWQGGERSMSGHSGPGHMMNRGGMSGRGSFAPGGASRGHVI
PRGGMQAGFGGQSRGSRPSDARFTRRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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