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Report for CCDS23506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23506.1 Public Mus musculus 9 Rbm5 23 108 98 CCDS HistoryNCBI Gene:83486Re-query CCDS DB by CCDS ID:23506.1Re-query CCDS DB by GeneID:83486See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23506.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182659.7 ENSMUSP00000138379.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182659.7Link to Ensembl Protein Viewer:ENSMUSP00000138379.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182659Re-query CCDS DB by Protein ID:ENSMUSP00000138379
Original member NCBI NM_001359525.1 NP_001346454.1 Updated not alive Link to Nucleotide Sequence:NM_001359525.1Link to Protein Sequence:NP_001346454.1Re-query CCDS DB by Nucleotide ID:NM_001359525Re-query CCDS DB by Protein ID:NP_001346454
Current member NCBI NM_001359525.2 NP_001346454.1 Accepted alive Link to Nucleotide Sequence:NM_001359525.2Link to Protein Sequence:NP_001346454.1Re-query CCDS DB by Nucleotide ID:NM_001359525Re-query CCDS DB by Protein ID:NP_001346454Link to BLAST:NP_001346454.1
Original member NCBI NM_001359526.1 NP_001346455.1 Updated not alive Link to Nucleotide Sequence:NM_001359526.1Link to Protein Sequence:NP_001346455.1Re-query CCDS DB by Nucleotide ID:NM_001359526Re-query CCDS DB by Protein ID:NP_001346455
Current member NCBI NM_001359526.2 NP_001346455.1 Accepted alive Link to Nucleotide Sequence:NM_001359526.2Link to Protein Sequence:NP_001346455.1Re-query CCDS DB by Nucleotide ID:NM_001359526Re-query CCDS DB by Protein ID:NP_001346455Link to BLAST:NP_001346455.1
Original member NCBI NM_148930.3 NP_683732.1 Updated not alive Link to Nucleotide Sequence:NM_148930.3Link to Protein Sequence:NP_683732.1Re-query CCDS DB by Nucleotide ID:NM_148930Re-query CCDS DB by Protein ID:NP_683732
Current member NCBI NM_148930.4 NP_683732.1 Accepted alive Link to Nucleotide Sequence:NM_148930.4Link to Protein Sequence:NP_683732.1Re-query CCDS DB by Nucleotide ID:NM_148930Re-query CCDS DB by Protein ID:NP_683732Link to BLAST:NP_683732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346454.1 815 Q91YE7-1 815 100% 0 0
NP_001346455.1 815 Q91YE7-1 815 100% 0 0
NP_683732.1 815 Q91YE7-1 815 100% 0 0

Chromosomal Locations for CCDS 23506.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107740967 107741092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107742392 107742521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107742601 107742698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107743837 107743911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107744183 107744362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107744935 107745006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107745087 107745236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107746019 107746180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107749708 107749799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107750008 107750092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107750463 107750548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107751719 107751791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107751876 107751953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107752111 107752198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107752977 107753074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107754022 107754182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107754423 107754488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107755853 107755913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107756909 107756992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107759776 107759849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107760322 107760391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107765495 107765650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107767543 107767708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107769561 107769577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2448 nt):
ATGGGTTCAGACAAAAGAGTGAGTAGAACAGAACGTAGTGGAAGATATGGTTCCATCATAGATAGGGATG
ACCGTGATGAGCGTGAATCTAGAAGCAGGCGGCGGGACTCAGATTACAAAAGATCAAGCGATGATCGGAG
AGGTGATAGATATGATGACTATCGGGACTATGATAGTCCAGAGAGAGAGCGTGAAAGAAGGAACAGTGAC
CGGTCTGAAGATGGCTATCATTCAGATGGTGACTATGGAGAACATGACTATAGACATGACATCAGTGATG
AGAGAGAGAGCAAGACCATCATGCTCCGTGGCCTTCCTATCACCATCACCGAGAGCGATATTCGAGAAAT
GATGGAGTCCTTTGAAGGCCCTCAGCCTGCAGATGTGAGGCTGATGAAGAGGAAAACAGGTGTAAGCCGT
GGTTTCGCCTTCGTGGAGTTTTATCACTTGCAAGATGCTACCAGCTGGATGGAAGCCAATCAGAAAAAAT
TGGTGATTCAAGGAAAGCACATTGCAATGCATTATAGCAATCCCAGACCTAAATTTGAAGATTGGCTTTG
TAACAAGTGCTGCCTTAACAATTTCAGGAAAAGACTAAAATGCTTCCGATGTGGAGCAGACAAGTTTGAC
TCTGAACAGGAAGTGCCCCCCGGAACCACAGAGTCTGCTCAGTCCGTGGATTACTACTGTGATACTATCA
TTCTTCGGAACATAGCTCCGCACACTGTGGTGGATTCCATCATGACAGCCCTATCTCCCTATGCTTCCTT
AGCTGTCAATAACATTCGCCTCATAAAAGACAAACAGACACAACAGAACAGAGGGTTTGCATTTGTGCAG
CTATCTTCTGCAATGGATGCCTCTCAGCTGCTTCAGATATTACAGAGTCTCCATCCTCCATTGAAAATTG
ATGGGAAAACTATTGGAGTTGATTTTGCAAAAAGTGCCAGAAAAGATTTGGTCCTTCCAGATGGTAACCG
AGTCAGCGCCTTCTCTGTAGCTAGTACAGCCATTGCTGCTGCTCAGTGGTCATCCACTCAGTCTCAAAGT
GGTGAAGGAGGCAGTGTTGACTACAGTTACATGCAGCCAGGCCAGGATGGCTACACACAGTACACTCAAT
ACTCACAGGATTACCAGCAGTTTTATCAGCAGCAAGCTGGAGGGCTGGAGTCTGATACATCAGCTACATC
AGGCACCACAGTGACTACCACCTCAGCAGCTGTAGTATCCCAAAGTCCCCAACTCTATAATCAGACCTCC
AACCCACCTGGCTCTCCGACTGAGGAAGCACAGCCTAGCACTAGCACAAGTACACAGGCCCCCGCTGCTT
CCCCTACTGGTGTAGTTCCTGGTACCAAGTATGCAGTACCTGACACGTCTACTTATCAATATGATGAATC
ATCAGGATATTATTATGATCCTACAACAGGGCTCTACTATGACCCTAACTCACAGTACTACTATAACTCC
TTAACACAGCAGTACTTGTACTGGGATGGCGAGAAGGAGACCTACGTGCCAGCTGCAGAGGCTAGCTCGA
ACCAGCAGACTGGCCTGCCTTCCACAAAAGAGGGAAAGGAGAAGAAAGAAAAGCCCAAGAGCAAAACTGC
TCAGCAGATTGCCAAAGACATGGAACGCTGGGCCAAGAGTTTAAATAAGCAGAAAGAAAATTTTAAAAAC
AGCTTTCAACCTGTCAATTCATTGAGAGAAGAAGAAAGGAGAGAATCTGCCGCAGCAGATGCTGGCTTTG
CTCTTTTTGAGAAGAAGGGAGCCTTAGCTGAAAGGCAGCAACTCCTCCCTGAATTGGTGCGCAATGGAGA
TGAAGAAAACCCCCTTAAAAGAGGTCTGGTTGCTGCTTACAGTGGTGACAGTGACAATGAGGAGGAGCTG
GTAGAGAGACTTGAGAGTGAGGAAGAGAAACTAGCTGACTGGAAGAAGATGGCCTGCCTGCTGTGCCGAC
GTCAGTTCCCAAACAGAGATGCCCTGGTCAGGCACCAGCAGCTCTCCGACTTACACAAGCAAAATATGGA
CATCTACCGAAGATCCAGGCTGAGCGAGCAGGAGTTGGAAGCCTTGGAGCTGAGGGAGAGAGAGATGAAA
TACAGAGACCGAGCAGCAGAAAGACGAGAGAAATACGGAATTCCAGAGCCCCCAGAGCCCAAGCGCAAGA
AGCAGTTTGATGCTGGCACTGTGAATTACGAGCAGCCCACCAAAGATGGCATTGACCACAGTAACATTGG
CAACAAGATGCTGCAGGCTATGGGTTGGCGGGAAGGCTCAGGCTTAGGAAGAAAGTGTCAAGGCATCACA
GCTCCCATTGAGGCTCAAGTCCGACTAAAAGGAGCTGGCTTGGGAGCCAAAGGCAGTGCCTATGGGTTGT
CAGGTGCCGATTCCTACAAAGATGCTGTTCGGAAAGCCATGTTTGCCCGGTTCACTGAGATGGAGTGA

Translation (815 aa):
MGSDKRVSRTERSGRYGSIIDRDDRDERESRSRRRDSDYKRSSDDRRGDRYDDYRDYDSPERERERRNSD
RSEDGYHSDGDYGEHDYRHDISDERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSR
GFAFVEFYHLQDATSWMEANQKKLVIQGKHIAMHYSNPRPKFEDWLCNKCCLNNFRKRLKCFRCGADKFD
SEQEVPPGTTESAQSVDYYCDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQ
LSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKSARKDLVLPDGNRVSAFSVASTAIAAAQWSSTQSQS
GEGGSVDYSYMQPGQDGYTQYTQYSQDYQQFYQQQAGGLESDTSATSGTTVTTTSAAVVSQSPQLYNQTS
NPPGSPTEEAQPSTSTSTQAPAASPTGVVPGTKYAVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNS
LTQQYLYWDGEKETYVPAAEASSNQQTGLPSTKEGKEKKEKPKSKTAQQIAKDMERWAKSLNKQKENFKN
SFQPVNSLREEERRESAAADAGFALFEKKGALAERQQLLPELVRNGDEENPLKRGLVAAYSGDSDNEEEL
VERLESEEEKLADWKKMACLLCRRQFPNRDALVRHQQLSDLHKQNMDIYRRSRLSEQELEALELREREMK
YRDRAAERREKYGIPEPPEPKRKKQFDAGTVNYEQPTKDGIDHSNIGNKMLQAMGWREGSGLGRKCQGIT
APIEAQVRLKGAGLGAKGSAYGLSGADSYKDAVRKAMFARFTEME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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