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Report for CCDS3202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3202.1 Public Homo sapiens 3 PDCD10 24 110 108 CCDS HistoryNCBI Gene:11235Re-query CCDS DB by CCDS ID:3202.1Re-query CCDS DB by GeneID:11235See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3202.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392750.7 ENSP00000376506.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392750.7Link to Ensembl Protein Viewer:ENSP00000376506.2Re-query CCDS DB by Nucleotide ID:ENST00000392750Re-query CCDS DB by Protein ID:ENSP00000376506
Original member Current member EBI ENST00000470131.5 ENSP00000417202.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000470131.5Link to Ensembl Protein Viewer:ENSP00000417202.1Re-query CCDS DB by Nucleotide ID:ENST00000470131Re-query CCDS DB by Protein ID:ENSP00000417202
Original member Current member EBI ENST00000473645.6 ENSP00000418317.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000473645.6Link to Ensembl Protein Viewer:ENSP00000418317.2Re-query CCDS DB by Nucleotide ID:ENST00000473645Re-query CCDS DB by Protein ID:ENSP00000418317
Original member Current member EBI ENST00000461494.5 ENSP00000420021.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000461494.5Link to Ensembl Protein Viewer:ENSP00000420021.1Re-query CCDS DB by Nucleotide ID:ENST00000461494Re-query CCDS DB by Protein ID:ENSP00000420021
Original member Current member EBI ENST00000497056.6 ENSP00000420553.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000497056.6Link to Ensembl Protein Viewer:ENSP00000420553.2Re-query CCDS DB by Nucleotide ID:ENST00000497056Re-query CCDS DB by Protein ID:ENSP00000420553
Original member Current member NCBI NM_007217.4 NP_009148.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007217.4Link to Protein Sequence:NP_009148.2Re-query CCDS DB by Nucleotide ID:NM_007217Re-query CCDS DB by Protein ID:NP_009148Link to BLAST:NP_009148.2
Original member Current member NCBI NM_145859.2 NP_665858.1 Accepted alive Link to Nucleotide Sequence:NM_145859.2Link to Protein Sequence:NP_665858.1Re-query CCDS DB by Nucleotide ID:NM_145859Re-query CCDS DB by Protein ID:NP_665858Link to BLAST:NP_665858.1
Original member Current member NCBI NM_145860.2 NP_665859.1 Accepted alive Link to Nucleotide Sequence:NM_145860.2Link to Protein Sequence:NP_665859.1Re-query CCDS DB by Nucleotide ID:NM_145860Re-query CCDS DB by Protein ID:NP_665859Link to BLAST:NP_665859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009148.2 212 Q9BUL8 212 100% 0 0
NP_665858.1 212 Q9BUL8 212 100% 0 0
NP_665859.1 212 Q9BUL8 212 100% 0 0

Chromosomal Locations for CCDS 3202.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 167684308 167684389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167687234 167687316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167687615 167687693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167695596 167695722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167697009 167697126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167704842 167704895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167720062 167720157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGAGGATGACAATGGAAGAGATGAAGAATGAAGCTGAGACCACATCCATGGTTTCTATGCCCCTCTATG
CAGTCATGTATCCTGTGTTTAATGAGCTAGAACGAGTAAATCTGTCTGCAGCCCAGACACTGAGAGCCGC
TTTCATCAAGGCTGAAAAAGAAAATCCAGGTCTCACACAAGACATCATTATGAAAATTTTAGAGAAAAAA
AGCGTGGAAGTTAACTTCACGGAGTCCCTTCTTCGTATGGCAGCTGATGATGTAGAAGAGTATATGATTG
AACGACCAGAGCCAGAATTCCAAGACCTAAACGAAAAGGCACGAGCACTTAAACAAATTCTCAGTAAGAT
CCCAGATGAGATCAATGACAGAGTGAGGTTTCTGCAGACAATCAAGGATATAGCTAGTGCAATAAAAGAA
CTTCTTGATACAGTGAATAATGTCTTCAAGAAATATCAATACCAGAACCGCAGGGCACTTGAACACCAAA
AGAAAGAATTTGTAAAGTACTCCAAAAGTTTCAGTGATACTCTGAAAACGTATTTTAAAGATGGCAAGGC
AATAAATGTGTTCGTAAGTGCCAACCGACTAATTCATCAAACCAACTTAATACTTCAGACCTTCAAAACT
GTGGCCTGA

Translation (212 aa):
MRMTMEEMKNEAETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKK
SVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKE
LLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAINVFVSANRLIHQTNLILQTFKT
VA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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