NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49807.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49807.1 Public Mus musculus 16 Lpp 23 108 98 CCDS HistoryNCBI Gene:210126Re-query CCDS DB by CCDS ID:49807.1Re-query CCDS DB by GeneID:210126See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49807.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115314.3 ENSMUSP00000110969.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115314.3Link to Ensembl Protein Viewer:ENSMUSP00000110969.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115314Re-query CCDS DB by Protein ID:ENSMUSP00000110969
Original member Current member NCBI NM_001145954.1 NP_001139426.1 Accepted alive Link to Nucleotide Sequence:NM_001145954.1Link to Protein Sequence:NP_001139426.1Re-query CCDS DB by Nucleotide ID:NM_001145954Re-query CCDS DB by Protein ID:NP_001139426Link to BLAST:NP_001139426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139426.1 488 Q8BFW7-4 488 100% 0 0

Chromosomal Locations for CCDS 49807.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 24721987 24721991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24722085 24722136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24761593 24762276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24845091 24845217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24889790 24889959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24971831 24972009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24977200 24977320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24979193 24979321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGAGCTACTGGGGAAAGTAGGGGCATGCCTGAAGAGGAGCACTGGAACACTGAAGGGCTCTGCTAGTT
CAATAGCCTCTCCTCCAGTTTCTACTCCTGTCACAGGACATAAGAGAATGGTCATTCCACAGCAGCCACC
CCTGACAGCAACCAAGAAGTCCGCAACAAAACCACAGCCTGCACCCCAGGCTGCACCCATCCCAGTGACT
CCAATTGGAACACTCAAACCCCAGCCTCAGCCAGTTCCAGCCTCCTATACTACGGCATCCACATCTTCAA
GGCCCACCTTTAATGTGCAAGTGAAGTCAGCTCAGCCCAGCCCACATTACATGGCTGGTCCATCCTCTGG
ACAAATATATGGTCCAGGGCCTCGTGGCTATAACAACCAGCCAGTTCCTGTATCGGGACAGTGTCCTCCT
CCTCCAACCTGTGTTGGTACCGACTATGCATATATTCCACCATCTGGACATCCGCCTGAGTCTGGATATG
GGTATACCTCCAACCAAGGACGCTATTATGAACCTTACTATGCAGCAGGTCCTAGCTATGGGGGCCGAAG
TGAAGGTGATACTGCTTATGGGCAACAGGTTCAACCTAATACCTGGAAGCGGGAAGCTGCGTATGCCCCT
CCTGCAAGCGGGAATCAGAACCATCCTGGCATGTATCCAGTCAGTGGCCCCAAGAAGACCTATATCACAG
ACCCTGTTTCAGCGCCCTGTGCACCACCACTGCAGCCAAAGGGTGGATACCCTGGGCCTATGGGGCCTCC
TTCCATCCCCCCATCATTCCGCCCAGAAGATGAGCTCGAACACTTGACCAAGAAGATGCTGTATGACATG
GAGAACCCACCCGCTGACGATTACTTTGGCCGTTGTGCCCGCTGTGGGGAAAATGTTGTTGGAGAAGGAA
CAGGATGTACTGCCATGGATCAGGTCTTCCACGTGGATTGCTTCACCTGCATTGTCTGTGATGTCAAGCT
CCGAGGGCAGCCTTTCTATGCCGTGGAGAAGAAGGCATACTGCGAGCCCTGCTACATTAATACCCTGGAG
CAGTGCAGTGTGTGTTCGAAGCCCATCATGGAGCGGATCCTCCGTGCCACCGGGAAGGCCTACCACCCCC
ACTGCTTCACCTGCGTGATGTGCCACCGTAGCCTGGACGGCATCCCATTTACTGTGGATGCTTGCGGTCT
CATTCACTGCATTGAGGACTTCCACAAGAAATTTGCCCCGCGCTGTTCTGTGTGCAAGGAACCTATCATG
CCAGCCCCAGGCCAGGAGGAGACTGTCCGCATTGTGGCTCTGGACCGTGATTTCCATGTGCACTGCTATC
GCTGTGAGGACTGTGGTGGTCTTCTGTCCGAAGGAGACAACCAAGGCTGCTACCCCTTGGATGGACACAT
TCTCTGTAAGACCTGCAACTCGGCTCGCATCAGGGTCTTGACGGCCAAGGCAAGCACTGACCTGTAG

Translation (488 aa):
MELLGKVGACLKRSTGTLKGSASSIASPPVSTPVTGHKRMVIPQQPPLTATKKSATKPQPAPQAAPIPVT
PIGTLKPQPQPVPASYTTASTSSRPTFNVQVKSAQPSPHYMAGPSSGQIYGPGPRGYNNQPVPVSGQCPP
PPTCVGTDYAYIPPSGHPPESGYGYTSNQGRYYEPYYAAGPSYGGRSEGDTAYGQQVQPNTWKREAAYAP
PASGNQNHPGMYPVSGPKKTYITDPVSAPCAPPLQPKGGYPGPMGPPSIPPSFRPEDELEHLTKKMLYDM
ENPPADDYFGRCARCGENVVGEGTGCTAMDQVFHVDCFTCIVCDVKLRGQPFYAVEKKAYCEPCYINTLE
QCSVCSKPIMERILRATGKAYHPHCFTCVMCHRSLDGIPFTVDACGLIHCIEDFHKKFAPRCSVCKEPIM
PAPGQEETVRIVALDRDFHVHCYRCEDCGGLLSEGDNQGCYPLDGHILCKTCNSARIRVLTAKASTDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH