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Report for CCDS41143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41143.1 Public Mus musculus X Nrk 23 108 98 CCDS HistoryNCBI Gene:27206Re-query CCDS DB by CCDS ID:41143.1Re-query CCDS DB by GeneID:27206See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 41143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064937.13 ENSMUSP00000063397.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064937.13Link to Ensembl Protein Viewer:ENSMUSP00000063397.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000064937Re-query CCDS DB by Protein ID:ENSMUSP00000063397
Original member Current member NCBI NM_013724.2 NP_038752.2 Accepted alive Link to Nucleotide Sequence:NM_013724.2Link to Protein Sequence:NP_038752.2Re-query CCDS DB by Nucleotide ID:NM_013724Re-query CCDS DB by Protein ID:NP_038752Link to BLAST:NP_038752.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038752.2 1455 Q9R0G8 1455 100% 0 0

Chromosomal Locations for CCDS 41143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 138914752 138914808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138921039 138921104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138958350 138958406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138959617 138959688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138963283 138963408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138964904 138965014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138966386 138966476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138967668 138967798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138970334 138970388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138971788 138971866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138972803 138972978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138974644 138974707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138975137 138976265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138978660 138978758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138981070 138981137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138982639 138982754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138983842 138983939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138985180 138985535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138986678 138986939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138988695 138988851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138990018 138990089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138991991 138992134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138994156 138994314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138995881 138995981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138997820 138997969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139000782 139000917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139003960 139004099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139007083 139007178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4368 nt):
ATGGCAGGACCTGGGAGTTGGAGGGACAAGGAGGTGACAGATCTTGGCCAGTTGCCGGATCCAACTGGAA
TATTCTCACTAGATAAAGCCATTGGTCTTGGTACTTATGGAAGAATCTTTTTGGGAATCCATGAAAAGAC
TGGTTCATTGGTGGCTGTTAAAGTAATGAGTGCCAGGAAGACTCCTTTGCCTGAGATAGGAAGACGGGTG
AGAGTGAATAAATACCAAAAGTCTGTTGGATGGAGATACAGCGATGAAGAAGAGGATCTTAGGACGGAAC
TCAACCTGCTGAGGAAGTACTCTTTCCACAAAAACATTGTGACCTTCTATGGAGCATTTTTCAAGCTGAA
TCCTCCTGGCCATCAGCACCAACTTTGGATGGTAATGGAGCTATGTGCAGCAGGCTCAGTCACTGATGTA
GTGAGGATGACAAGAAATCAGAGTTTAAAAGAAGACTGGATCGCTTATATCTGTCGAGAAATCCTTCAGG
GCTTAGCTCACCTTCATGCACACCAAGTAATTCACCGGGACATCAAAGGACAAAATGTGCTGCTGACTCA
TGATGCTGAAGTCAAAATAGTGGATTTTGGAGTGAGTGCCCAAGTGAGCAGAACAAATGGACGGAGAAAT
AGCTTCATTGGTACACCGTACTGGATGGCCCCAGAGGTGATTCATTGTGATGAGGACCCAAGGTGTTCCT
ATGATTACAGAAGTGATGTGTGGTCTGTGGGAATCACTGCTATTGAAATGGCTGAAGGGGCTCCTCCTCT
GTGTAAGCTTCAGCCTCTGGAAGCCCTTTGTGTTATTCTACGGGAAGCCGCTCCCAAAGTCAAATCCAGT
GGATGGTCCCGTAAGTTCCAGAATTTCATGGAAAATTGCATGATAAAAAATTTCCTATTTCGTCCTACAT
CTGGAAACATGCTTCTTCACCCATTTGTCCATGATATAAAAAATGAACGACGTGTTGTGGAGTCCTTGAC
AAAACATCTTACTGGGATCATTCAAAAGAGAGAGAAAAAAGGAATACCTGTGGCCTTTGAAGGAGAAGAA
GCTGCTAAGGAACAGTACATCACAAGGAGATTCAGAGGGCCTTCTTGCACTCCTGAGCTTCTCAGAGTGC
CAACCAGCAGCAGATGCAGACCACTCAGAGTCCTGCATGGAGAGCCCCCTCAGCCAAGGTGGCTACCTGA
TCAAGAAGACCCACAGGACCAAGAACTTCAACAACTGCAGAAGGCAGCCGGAGTGTTCATGCCTCTACAT
TCTCAGGACAATACATCCAAGCTTTTCCCAAAGCAGGTTGAGGTAGCACCCTATCTCCGTGGGGCAGCTC
AGGTGGTCATGCCAGTACTGGTACAGGTTGAAGCACCGCCCCAAGTAAGCAAAGCAGCCCAGATGCTCAA
GTCACTCCCCACTCAGGACAACAAAGCTACTTCTCCAGAGGTCCAGGCCCCCGTAGCCGAAGGACAGCAG
GCCCAGCATGAGGCCTTAGAGACAGAACAGCCTAAAGATTTGGACCAGGTGCCAGAAGAATTTCAGGGGC
AAGACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCTGCTGAGCAGCAGCAGATACATAATCCGGTTCC
TGAGCAGCCGCCGGAGGAGGATAGGGAGCCTGAGCAAGCTGAGGTGCAGGAAGAGGCTGTGGAGCCTCCC
CAAGCTGAGATCGAGGACAAGGAACCTGAGGTAGTGCAAGTGCACGCCCAGGTGCTCCTGCCTTTACTGT
CCCAGAACCGTCACGTGCTCTTGCCTCTTCATTTGGATAGACAGCTGCTCATTCCGGTAGGGGAACAAAA
TGAAGAGGTACCACGAGCCCAGGCCTGGGATCTAGAGGCCTCAAGGGCAGTTGGTGCAGTGCAAGCGCTG
ATCGAGGGACTATCCAGGGACTTGCTTCGAGCACCAAATGCATTTGTCACAAAACCACTTGGTCCGCTGC
AGATCTTCTTGGAAAATTTGTCTACAGACGGGTTTTACACTGAGCCGGAACCGACACAGAAGAAAAAGTC
GAAAGTTGCTAGTCTAAGGAAAGCAATAGCAAAACGACTAAGACCCAAGAGGTTCAGAGCAAAGGCATTA
TGGCGACTTGAAGATTTTGAATTCTCAGATGTAGAAACCAGCAGGAGACGGCGCCACCGTAGATGGGAGG
ACATCTTTAATCAGCATGAAGAGCAACTGAGACGAGTTGAAAATGACAGAGAAGATGACTCATCAGACAA
TGATGAAGTGTTTCATTCAATTCAGGCTGAAGTCCAAATAGAACCACACGCTGCAAATCCTGCAGGAAAT
GAGGTCCATGAGAGATCTGCTCCCATGCCTTGCAACCGGAATCGCACACATCGTGTGAAATTTTCTCCAA
GTGTTGGTGAGGAAGAGCCTTCTTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACAT
CCGACCGAGGAATTGCCTAAATCCTCAGAATTTTCAAGCTCAATCAGACTCATCTTCTGAGGAGGACAGT
CCTGTGACTAGGAGGAAGTCCCAGTCATCACCGCCTTATTCTACTATTGATCAGAAGCTACTGATTGATA
TCCACGTTCCAGATGGATTTAAAGTGGGGAAAATATCACCTCCTGTGTACTTGACAAATGAATGGGTAGG
CTATAATGCACTCTCTGAAATCTTCTGGGATGACTGGATAATGCCTACACGTCCCGCTCGGCCACCTGAA
GAAGATGGTGATTATGTTGAACTCTATGATGCTGATGCCAATGCTAATGGTGATGAAGAAGTTGCAAACG
GTGCTTATGAAGATCCTCGTGATGGTGCCAATGGCCATGATGACATGAATAACCAGCTTGATCAAGCAAA
TGGTTATGAAGGCCATGGTGCTGCTGGCTACAATGGTGGAGACGTTGGTGGTAATCATGGTGCTGCTTTC
AATGGGCCAAGAGCAAATTATCCCAGAGCGGGAATCTTGAAAAACGGTCATAATGATGGACGTGCTCTAA
ACAGGGGAGCTTTTGGAGTCTTTGGAGACAATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGAAGCAGG
TGCAGCCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACAGAAACAGGGAGGCCAATGGA
AGGAATGAAGAGAATGGAGCATTTGGACGGGATCAACATGTATTTCCAGAGTTTGAACATGAGGAATCAG
ATCGTGGAACTGAGACCTCAGATTCAATTGCCTTGGAGATCACATCCTTTGATGGTGAGCAAAACAGTGG
TAGACCAGTATCATCAACAACAATGGGTTTTCCTATTGGACGCTCATCTCCTAGAGGTTCTGATTTTGGG
AGTGACATCTCATATAACAGCCCAATACTACATGTGTATGAAAAGGATTTCTCATCTGAGGTCTACTGTG
GTTCTTTGTGGGGAGTCAATTTGTTGCTGGGCACCCAATCTCATCTGTATCTGATGGACCGAAGTGGAAA
GGCAGAAATTGTTAAACTTATAAAGCGAAGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCTCAATTTG
CTGATTACCATCTCTGGCAAAAAGAACAGACTTCGCGTGTATCATCTGTCTTGGCTGAGGAACAAAATTC
TGAATAATGATCCAAAGAGTAAGAAAAGGCAGAAGGCGATGAGGAAGAAAGAGGAAGCTTGCAAAGCTAT
CGATAAGTTGATTGGCTGTGAACACTTCAGTGTCCTTCAACATGAAGAAACAACATACATTGCGGTTGCT
GTGAAGTCATCAATTCACCTCTTTGCATGGGCACCAAAATCCTTTGATGAAAACACTGCCATTAAAGTGT
TTCCAACTCGTGATCTTAAGCCACTGACAGTTGACCTGGCTGTTGGTTCAGAGAAAACACTGAAGATTTT
CTTCAGCTCAGCTAATGGATATCATATCATCGATGCAGAATCTGAAGTTATGTCTGAGGTGACCTTGCCA
AATAATAATGTCGTCATTTTACCTGATTGCTTGGGACTTGGTGTGATGCTCTCCCTCAATGCTGAAGCTG
CCTCCGAGGAAGCAAACGAACAACTCCTTAAGAAGATCCTGGACGTGTGGAAGGACATACCGTCTTCTGT
GGCTTTTGAGTGTACAAAGAGAATCACTGGATGGGACCAAAAGGCTATTGAAGTGCGCTCTCTTCAGTCA
ACTATTCTCGAGAATGAGCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCTCTGTGCCCGTGGTGACA
AGATGTTCTTTGCTTCTACACTGAGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGA
AGAGCTCCATAGAAGCTATGCTGTTTAA

Translation (1455 aa):
MAGPGSWRDKEVTDLGQLPDPTGIFSLDKAIGLGTYGRIFLGIHEKTGSLVAVKVMSARKTPLPEIGRRV
RVNKYQKSVGWRYSDEEEDLRTELNLLRKYSFHKNIVTFYGAFFKLNPPGHQHQLWMVMELCAAGSVTDV
VRMTRNQSLKEDWIAYICREILQGLAHLHAHQVIHRDIKGQNVLLTHDAEVKIVDFGVSAQVSRTNGRRN
SFIGTPYWMAPEVIHCDEDPRCSYDYRSDVWSVGITAIEMAEGAPPLCKLQPLEALCVILREAAPKVKSS
GWSRKFQNFMENCMIKNFLFRPTSGNMLLHPFVHDIKNERRVVESLTKHLTGIIQKREKKGIPVAFEGEE
AAKEQYITRRFRGPSCTPELLRVPTSSRCRPLRVLHGEPPQPRWLPDQEDPQDQELQQLQKAAGVFMPLH
SQDNTSKLFPKQVEVAPYLRGAAQVVMPVLVQVEAPPQVSKAAQMLKSLPTQDNKATSPEVQAPVAEGQQ
AQHEALETEQPKDLDQVPEEFQGQDRAPEQPRQGQAAEQQQIHNPVPEQPPEEDREPEQAEVQEEAVEPP
QAEIEDKEPEVVQVHAQVLLPLLSQNRHVLLPLHLDRQLLIPVGEQNEEVPRAQAWDLEASRAVGAVQAL
IEGLSRDLLRAPNAFVTKPLGPLQIFLENLSTDGFYTEPEPTQKKKSKVASLRKAIAKRLRPKRFRAKAL
WRLEDFEFSDVETSRRRRHRRWEDIFNQHEEQLRRVENDREDDSSDNDEVFHSIQAEVQIEPHAANPAGN
EVHERSAPMPCNRNRTHRVKFSPSVGEEEPSLEEAQPQQQQQQPMNIRPRNCLNPQNFQAQSDSSSEEDS
PVTRRKSQSSPPYSTIDQKLLIDIHVPDGFKVGKISPPVYLTNEWVGYNALSEIFWDDWIMPTRPARPPE
EDGDYVELYDADANANGDEEVANGAYEDPRDGANGHDDMNNQLDQANGYEGHGAAGYNGGDVGGNHGAAF
NGPRANYPRAGILKNGHNDGRALNRGAFGVFGDNAARAFHGAAGEAGAAFGNHGANRGNGRGNRNREANG
RNEENGAFGRDQHVFPEFEHEESDRGTETSDSIALEITSFDGEQNSGRPVSSTTMGFPIGRSSPRGSDFG
SDISYNSPILHVYEKDFSSEVYCGSLWGVNLLLGTQSHLYLMDRSGKAEIVKLIKRRPFRQIQVVEQLNL
LITISGKKNRLRVYHLSWLRNKILNNDPKSKKRQKAMRKKEEACKAIDKLIGCEHFSVLQHEETTYIAVA
VKSSIHLFAWAPKSFDENTAIKVFPTRDLKPLTVDLAVGSEKTLKIFFSSANGYHIIDAESEVMSEVTLP
NNNVVILPDCLGLGVMLSLNAEAASEEANEQLLKKILDVWKDIPSSVAFECTKRITGWDQKAIEVRSLQS
TILENELKRRSIKKLRFLCARGDKMFFASTLSNDHSRVYLMSLGKLEELHRSYAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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