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Report for CCDS18982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18982.1 Public Mus musculus 4 Thap3 23 108 98 CCDS HistoryNCBI Gene:69876Re-query CCDS DB by CCDS ID:18982.1Re-query CCDS DB by GeneID:69876See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18982.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036680.7 ENSMUSP00000035240.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036680.7Link to Ensembl Protein Viewer:ENSMUSP00000035240.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000036680Re-query CCDS DB by Protein ID:ENSMUSP00000035240
Original member Current member NCBI NM_175152.4 NP_780361.2 Accepted alive Link to Nucleotide Sequence:NM_175152.4Link to Protein Sequence:NP_780361.2Re-query CCDS DB by Nucleotide ID:NM_175152Re-query CCDS DB by Protein ID:NP_780361Link to BLAST:NP_780361.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780361.2 218 Q8BJ25 218 100% 0 0

Chromosomal Locations for CCDS 18982.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151983065 151983352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151983635 151983736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151985669 151985861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151988883 151988956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGCCGAAGTCTTGCGCGGCCCGGCAATGCTGCAACCGCTACAGCAGCCGCAGGAAGCAGCTCACCTTCC
ACCGGTTCCCCTTCAGCCGCCCGGAGCTGTTGAGGGAGTGGGTGCTCAACATCGGCCGGGCTGACTTCAA
GCCTAAGCAGCACACAGTCATCTGCTCGGAACACTTCAGACCCGAGTGCTTCAGCGCCTTTGGGAACCGC
AAGAACCTGAAACACAATGCTGTGCCCACGGTGTTCGCTTTTCAGAACCCCACAGAGGTCTGCCCTGAGG
TGGGGGCTGGTGGGGACAGCTCAGGGAGGAACATGGACACCACACTGGAAGAACTTCAGCCTCCAACCCC
GGAAGGCCCCGTGCAGCAGGTCTTACCAGATCGAGAAGCAATGGAGGCCACGGAGGCCGCTGGCCTGCCT
GCCAGCCCTCTGGGGTTGAAGAGGCCCCTTCCGGGACAGCCGTCTGATCACAGCTATGCCCTTTCGGACT
TGGATACCCTCAAAAAAAAACTCTTTCTCACACTGAAGGAAAACAAGAGGCTTCGGAAGCGGCTGAAAGC
CCAGAGGCTGCTGTTGCGGAGGACATGTGGCCGCCTGAGAGCCTACAGAGAGGGACAGCCGGGACCTCGG
GCCAGACGGCCGGCACAGGGAAGCTGA

Translation (218 aa):
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLREWVLNIGRADFKPKQHTVICSEHFRPECFSAFGNR
KNLKHNAVPTVFAFQNPTEVCPEVGAGGDSSGRNMDTTLEELQPPTPEGPVQQVLPDREAMEATEAAGLP
ASPLGLKRPLPGQPSDHSYALSDLDTLKKKLFLTLKENKRLRKRLKAQRLLLRRTCGRLRAYREGQPGPR
ARRPAQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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