NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20770.1 Public Mus musculus 7 Zfp444 23 108 98 CCDS HistoryNCBI Gene:72667Re-query CCDS DB by CCDS ID:20770.1Re-query CCDS DB by GeneID:72667See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054680.11 ENSMUSP00000050797.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054680.11Link to Ensembl Protein Viewer:ENSMUSP00000050797.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054680Re-query CCDS DB by Protein ID:ENSMUSP00000050797
Original member Current member EBI ENSMUST00000108566.7 ENSMUSP00000104206.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108566.7Link to Ensembl Protein Viewer:ENSMUSP00000104206.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108566Re-query CCDS DB by Protein ID:ENSMUSP00000104206
Original member Current member EBI ENSMUST00000108567.8 ENSMUSP00000104207.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108567.8Link to Ensembl Protein Viewer:ENSMUSP00000104207.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108567Re-query CCDS DB by Protein ID:ENSMUSP00000104207
Original member Current member NCBI NM_001146024.1 NP_001139496.1 Accepted alive Link to Nucleotide Sequence:NM_001146024.1Link to Protein Sequence:NP_001139496.1Re-query CCDS DB by Nucleotide ID:NM_001146024Re-query CCDS DB by Protein ID:NP_001139496Link to BLAST:NP_001139496.1
Original member Current member NCBI NM_028316.3 NP_082592.2 Accepted alive Link to Nucleotide Sequence:NM_028316.3Link to Protein Sequence:NP_082592.2Re-query CCDS DB by Nucleotide ID:NM_028316Re-query CCDS DB by Protein ID:NP_082592Link to BLAST:NP_082592.2

Chromosomal Locations for CCDS 20770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6183891 6184202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6188134 6188242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6189406 6189980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGAGGCCCCAACGACCCAGCCAGTGAAGCAGGAGAACCTGGCGGTTGAGGCCCTGACGCTCGACTCCC
CGTGGCACCGCTTCCGCCACTTCCACCTGGGCGATGCAGCAGGGCCACGTGAGGCCCTGGGGCTGCTCCG
TGCCCTGTGCCGGGACTGGCTCCAGCCGGAAGTGCACACGAAGGAGCAGATGCTGGAGCTGCTGGTGTTG
GAGCAGTTCCTGAGCGCCCTCCCTGCAGACACCCAGGCGTGGGTGTGCAGCCGCCGGCCCCAGAGCGGAG
AGGAGGCTGTGGCGCTGCTGGAGGAGCTCTGGGGCCCAGCAACCTCCCCAGATGGGTCGTCAGCAATGAG
GGCACCTCGGGATGTGACCGAAGGCCCGGGGGTCAGTGTTGGAAAGGAAGAAAGTGGGGCAATTCCCTTA
GGAACCTCCTCTGGGACAGAGGTACCCGCAACGGAGAACAGCGGGGCCATGCGCCCATACAAGCAGGAGC
CGGGCAGCCCCCCACCAGCTCCACTGGCACCGGTCCTCCCTGCCTTCCTGGCAGCTCCAGGCACTGTGTC
GTGCCCGGAGTGCGGGAAGTCTCCCTTGAAGCCGGCGCATCTACTGCGCCACCGGCAAAGCCACTCCGGT
GAGAAGCCGCACGCGTGCCCTGAGTGCGGCAAGGCATTCCGGCGTAAGGAGCACCTGCGGCGCCACCGCG
GCACGCACCCCGGCAGCCCAGGGCCTGCACTGCGCCCCCTGCCTGCGCGCGAGAAGCCGCACGCGTGCTG
CGAATGCGGCAAGACCTTCTACTGGCGCGAGCACCTGGTGCGCCACCGCAAGACACACTCTGGCGCGCGA
CCTTTCGCCTGCTGGGAATGTGGCAAGGGCTTCGGGAGGCGTGAGCATGTGCTCCGTCACCAGCGTATCC
ATGGCCGGGCGGCCGCGGTAGCTCAAGGGACTTCAGCACCAGGTCCAGAGGGTGGTGGTGCCTTTCCGCC
CTGGGCTCTGGGGTAG

Translation (331 aa):
MEAPTTQPVKQENLAVEALTLDSPWHRFRHFHLGDAAGPREALGLLRALCRDWLQPEVHTKEQMLELLVL
EQFLSALPADTQAWVCSRRPQSGEEAVALLEELWGPATSPDGSSAMRAPRDVTEGPGVSVGKEESGAIPL
GTSSGTEVPATENSGAMRPYKQEPGSPPPAPLAPVLPAFLAAPGTVSCPECGKSPLKPAHLLRHRQSHSG
EKPHACPECGKAFRRKEHLRRHRGTHPGSPGPALRPLPAREKPHACCECGKTFYWREHLVRHRKTHSGAR
PFACWECGKGFGRREHVLRHQRIHGRAAAVAQGTSAPGPEGGGAFPPWALG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH