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Report for CCDS85310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85310.1 Public Mus musculus 7 Htatip2 23 108 98 CCDS HistoryNCBI Gene:53415Re-query CCDS DB by CCDS ID:85310.1Re-query CCDS DB by GeneID:53415See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000207895.1 ENSMUSP00000146858.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207895.1Link to Ensembl Protein Viewer:ENSMUSP00000146858.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207895Re-query CCDS DB by Protein ID:ENSMUSP00000146858
Original member Current member NCBI NM_016865.3 NP_058561.2 Accepted alive Link to Nucleotide Sequence:NM_016865.3Link to Protein Sequence:NP_058561.2Re-query CCDS DB by Nucleotide ID:NM_016865Re-query CCDS DB by Protein ID:NP_058561Link to BLAST:NP_058561.2

Chromosomal Locations for CCDS 85310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 49759214 49759311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49759598 49759793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49762060 49762167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49770810 49770947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49772576 49772637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49773301 49773526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGCTCGGTCCCACGGTGCTGGGCACGGTCGTAGCCGCGCTGGTGGCTTCAATGCTACTGTTGCAGAGTG
GGGACGAGGGGTCCGGGGCTGCTCCCAGCATGGCGGACAAGGAAGCACTGCCGAAGCTTCGGGAAGACTT
CAAGATGCAGAATAAATCCGTCTTTATTTTGGGCGCCAGCGGGGAAACTGGCAAAGTACTTTTAAAGGAA
ATCCTGGGACAGAACCTGTTTTCCAAAGTAACGCTCATTGGTCGGAGGAAGCTCACCTTCGAGGAGGAAG
CTTATAAAAATGTGAATCAAGAAGTGGTGGACTTTGAGAAGCTGGATGTCTATGCTTCTGCCTTTCAAGG
TCATGATGTTGGATTCTGTTGCCTGGGCACCACCAGAAGCAAGGCTGGAGCGGAAGGGTTTGTTCGTGTT
GACCGAGATTATGTGCTCAAGTCTGCAGAGCTGGCGAAAGCAGGAGGGTGCAAACATTTCAACTTGCTGT
CCTCCAGGGGGGCCGATAAGTCCAGCAGTTTCTTATACCTACAAGTAAAGGGAGAAGTGGAAGCCAAGGT
TGAAGAATTAAAGTTTGATCGACTCTCAGTGTTTCGGCCAGGAGTCCTACTGTGTGACAGGCAAGAGTCT
CGTCCAGGCGAATGGCTGGCTAGGAAATTCTTCGGCTCTCTGCCAGACTCTTGGGCCAGTGGGTACGCTG
TGCCTGTGGTGACGGTGGTTAGAGCGATGCTGAACAACCTGGTGAGTCCCAGCAGCGGACAAATGGAACT
TCTGGAAAATAAGGCCATCCTCCACCTGGGGAAAGACAGGGATGTGCCCAAACTGTGA

Translation (275 aa):
MLGPTVLGTVVAALVASMLLLQSGDEGSGAAPSMADKEALPKLREDFKMQNKSVFILGASGETGKVLLKE
ILGQNLFSKVTLIGRRKLTFEEEAYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRV
DRDYVLKSAELAKAGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQES
RPGEWLARKFFGSLPDSWASGYAVPVVTVVRAMLNNLVSPSSGQMELLENKAILHLGKDRDVPKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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