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Report for CCDS49759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49759.1 Public Mus musculus 16 Atf7ip2 23 108 98 CCDS HistoryNCBI Gene:75329Re-query CCDS DB by CCDS ID:49759.1Re-query CCDS DB by GeneID:75329See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49759.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119023.7 ENSMUSP00000113480.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119023.7Link to Ensembl Protein Viewer:ENSMUSP00000113480.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119023Re-query CCDS DB by Protein ID:ENSMUSP00000113480
Original member Current member NCBI NM_029253.1 NP_083529.1 Accepted alive Link to Nucleotide Sequence:NM_029253.1Link to Protein Sequence:NP_083529.1Re-query CCDS DB by Nucleotide ID:NM_029253Re-query CCDS DB by Protein ID:NP_083529Link to BLAST:NP_083529.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083529.1 300 Q3UL97-3 300 100% 0 0

Chromosomal Locations for CCDS 49759.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10201310 10201454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10204604 10204722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10209134 10209268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10211005 10211103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10212653 10212813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10234318 10234391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10236158 10236219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10237166 10237273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGAAAGTCCAGACAGAAAAAGACAGAAGGTTTTAAAGGCCAAGAAAACAATGCCTACAAGTTACCAGA
AGCAGTTGGAGATCCTGAACAAGTCAACGAATGTTGAAGCTCCAAAAACAACAGTTGGAACTAATATTCC
AAATGGTCATAATCAGAAGATGTTTTCAAAAAACAAAGAAAATGTTAAGGTCATGAAAGTTTCAGAGCAA
ATTAATGAAAATGCTTGTGGGGCTCTGGAAAGACATACAGCACTGCTAGAACAGGTTAAACATTGGATTC
GACAGGAGATTTGCATGATAAACTGTAATTTATTTGATAAAAAACTGAATGAATTGAATGAACGCATTGG
GAAGACCCAGTGCAAGAGTAGACATGAAGCAATAGCTGGTGAACTCTTTGTAAAAATAAGAAGACTTCAA
AAACGCATCAAAACAGTATTATCATCTCAAAGAAATTGTTTGGAACCAAACACATTACCCAGTAATACAG
TCTGTAAGGTTACAGATTCAGAGGCTATGAATTTGAATGTGACCCAAAAGTCAGTTAAAAGTCGAAGTAA
AAGAATATCTTCTGTGAACCATACCCCTTTAAACTCTTCAGAAAAAGCAGGTAGAAAGACTAATTTGCCA
TCAACTTGTGTTGAGTTTGCTTCTGAAAGTAACACTGATGACGTTATGTTGATTTCTGTGAAAAATTCTA
ATTTGACAACTTCAATTACATCAGAGCAAACAGAAATTAGAAAAAATACATCAAGAAATTTGAGCAACTC
ACCTAATAGCATGATTAAAGTTGGGCCCGTAGAGAAGAAATTTGATTTTGTTATTGACTTGACAAGAGAA
GGCCCGTCCAACTACAGCATAGGTAAAGGATGTTTTTACATCTTTCTAAGTAAATGTATGTGA

Translation (300 aa):
MESPDRKRQKVLKAKKTMPTSYQKQLEILNKSTNVEAPKTTVGTNIPNGHNQKMFSKNKENVKVMKVSEQ
INENACGALERHTALLEQVKHWIRQEICMINCNLFDKKLNELNERIGKTQCKSRHEAIAGELFVKIRRLQ
KRIKTVLSSQRNCLEPNTLPSNTVCKVTDSEAMNLNVTQKSVKSRSKRISSVNHTPLNSSEKAGRKTNLP
STCVEFASESNTDDVMLISVKNSNLTTSITSEQTEIRKNTSRNLSNSPNSMIKVGPVEKKFDFVIDLTRE
GPSNYSIGKGCFYIFLSKCM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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