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Report for CCDS49102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49102.1 Public Mus musculus 12 Smoc1 23 108 98 CCDS HistoryNCBI Gene:64075Re-query CCDS DB by CCDS ID:49102.1Re-query CCDS DB by GeneID:64075See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110347.8 ENSMUSP00000105976.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110347.8Link to Ensembl Protein Viewer:ENSMUSP00000105976.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110347Re-query CCDS DB by Protein ID:ENSMUSP00000105976
Original member Current member NCBI NM_001146217.1 NP_001139689.1 Accepted alive Link to Nucleotide Sequence:NM_001146217.1Link to Protein Sequence:NP_001139689.1Re-query CCDS DB by Nucleotide ID:NM_001146217Re-query CCDS DB by Protein ID:NP_001139689Link to BLAST:NP_001139689.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139689.1 463 Q8BLY1-1 463 99.784% 0 1

Chromosomal Locations for CCDS 49102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 81027063 81027158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81104607 81104772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81105899 81106011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81135776 81135875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81137965 81138012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81150619 81150708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81152673 81152753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81167507 81167699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81168229 81168311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81170186 81170291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81179479 81179723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81183988 81184041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81184549 81184565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGCTGCCCGCGCGCGTCCGTCTGCTCACGCCCCACTTGCTGCTCGTGTTGGTGCAGCTGTCCCCGGCCG
GCGGCCACCGCACCACCGGCCCCAGGTTCCTAATAAGTGACCGTGACCCTCCGTGCAACCCACACTGTCC
CAGGACTCAGCCCAAGCCCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCATGTGTGAGTACCAGAGA
GCCAAGTGCCGAGACCCAGCCCTGGCCGTGGTCCATCGAGGTCGATGCAAAGATGCTGGCCAGAGCAAGT
GTCGCCTGGAGAGGGCTCAGGCCTTGGAACAGGCCAAGAAGCCTCAGGAGGCTGTGTTTGTCCCAGAGTG
TGGCGAGGATGGTTCCTTCACACAGGTGCAGTGCCATACGTACACAGGGTACTGCTGGTGTGTCACCCCA
GATGGCAAGCCCATCAGTGGTTCTTCCGTGCAGAATAAAACTCCTGTATGTTCAGGTCCAGTTACCGACA
AGCCCTTGAGCCAGGGTAATTCAGGAAGAAAAGTCTCCTTTCGTTTCTTTTTAACCCTCAATTCAGATGA
TGGCTCTAAACCCACGCCCACGATGGAGACCCAACCTGTGTTCGATGGAGATGAAATCACAGCCCCCACC
TTATGGATTAAGCACTTGGTAATCAAAGACTCCAAGTTGAATAACACCAACGTAAGAAATTCAGAGAAAG
TCCATTCCTGTGACCAGGAAAGACAGAGTGCCCTGGAAGAGGCGCGGCAGAATCCCCGAGAGGGCATTGT
GATCCCCGAGTGTGCTCCTGGTGGGCTCTATAAGCCGGTGCAATGCCACCAATCCACAGGCTACTGTTGG
TGCGTCCTAGTAGACACAGGGCGCCCATTGCCGGGGACTTCCACACGCTATGTGATGCCAAGTTGCGAGA
GTGACGCCAGAGCCAAGAGCATAGAGGCCGATGACCCTTTCAAGGACAGGGAGTTGCCAGGTTGTCCTGA
AGGGAAGAAGATGGAATTTATTACCAGCCTGCTGGATGCCCTCACCACAGACATGGTTCAGGCCATTAAC
TCAGCAGCGCCCACTGGAGGTGGGAGGTTCTCAGAGCCAGACCCCAGCCACACCCTGGAGGAGCGAGTGG
CACACTGGTACTTCAGCCAGCTGGATAGCAACAGCAGCGATGACATTAACAAGCGGGAGATGAAGCCGTT
CAAGCGCTATGTAAAGAAGAAAGCCAAGCCCAAGAAATGTGCCCGGCGCTTCACCGACTACTGCGACCTG
AACAAGGATAAGGTCATCTCACTGCCTGAGCTGAAGGGCTGCCTGGGTGTTAGCAAAGAAGGTGGTAGCC
TTGGCAGCTTCCCTCAGGGAAAACGAGCAGGCACAAACCCGTTCATCGGACGCCTTGTCTAA

Translation (463 aa):
MLPARVRLLTPHLLLVLVQLSPAGGHRTTGPRFLISDRDPPCNPHCPRTQPKPICASDGRSYESMCEYQR
AKCRDPALAVVHRGRCKDAGQSKCRLERAQALEQAKKPQEAVFVPECGEDGSFTQVQCHTYTGYCWCVTP
DGKPISGSSVQNKTPVCSGPVTDKPLSQGNSGRKVSFRFFLTLNSDDGSKPTPTMETQPVFDGDEITAPT
LWIKHLVIKDSKLNNTNVRNSEKVHSCDQERQSALEEARQNPREGIVIPECAPGGLYKPVQCHQSTGYCW
CVLVDTGRPLPGTSTRYVMPSCESDARAKSIEADDPFKDRELPGCPEGKKMEFITSLLDALTTDMVQAIN
SAAPTGGGRFSEPDPSHTLEERVAHWYFSQLDSNSSDDINKREMKPFKRYVKKKAKPKKCARRFTDYCDL
NKDKVISLPELKGCLGVSKEGGSLGSFPQGKRAGTNPFIGRLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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