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Report for CCDS28795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28795.1 Public Mus musculus 17 Adgrf1 23 108 98 CCDS HistoryNCBI Gene:77596Re-query CCDS DB by CCDS ID:28795.1Re-query CCDS DB by GeneID:77596See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047399.5 ENSMUSP00000049380.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047399.5Link to Ensembl Protein Viewer:ENSMUSP00000049380.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047399Re-query CCDS DB by Protein ID:ENSMUSP00000049380
Original member NCBI NM_133776.2 NP_598537.2 Updated not alive Link to Nucleotide Sequence:NM_133776.2Link to Protein Sequence:NP_598537.2Re-query CCDS DB by Nucleotide ID:NM_133776Re-query CCDS DB by Protein ID:NP_598537
Current member NCBI NM_133776.3 NP_598537.2 Accepted alive Link to Nucleotide Sequence:NM_133776.3Link to Protein Sequence:NP_598537.2Re-query CCDS DB by Nucleotide ID:NM_133776Re-query CCDS DB by Protein ID:NP_598537Link to BLAST:NP_598537.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598537.2 908 Q8VEC3 908 100% 0 0

Chromosomal Locations for CCDS 28795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 43291048 43291116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43293224 43293284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43295117 43295260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43296666 43296839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43299005 43299105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43300794 43300852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43303635 43303786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43305232 43305395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43307415 43307603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43309987 43311357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43313175 43313216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43314429 43314488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43321158 43321224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43323845 43323918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGAGAATTGGACTTCTGTGGCTCGTCCCTCTCTTCACGCTCACTGAGGGCACCGATGGCTTCCTGCAGC
AGAAAAATGATGGCCGAAGAACAAAAGAAATTGTCAGTATGGTTGAGGAAAGGCATCCAGTCCACGAGTA
TGAGGTGCTACTGCAGGTGACATACAGAGATCCAGAGGAGAAGAGAGAACTGAAGAGATTTCTGAAGCTC
TTGAAATCTCCGTCGCCGAGTTTACGTGGTCCCAGCAAGATCATCAGAGTGAAGGCCACCACATACTGCA
GAAGCCGAAAAGGGTTCCTGGAGTGTGCCTGCGAAGACAGCTATACGTGGTTTCCTCCCTCCTGCCTTGA
CCCCCAGAACTGCTGCCTTCACACAACTGGACCCGTCCCAAGCTGCAATTGCTCTCTCAGAGGCCTCAGG
CAGAGCATTAATTTCTGTGAGAGAGCAAAAGTTTGGGGCACTTTTGAAATCGATGAAAAATTTCCTGAAG
ACCTTTGGAATTCATCATCTGATGTATATGCCCACTACACAGTTGGAATTGAAAATCAACTTAAAGAAGC
GTACAGAAGAGTCCATGGTTTTGAGTCAGTTCGGGTCACCCAATTTCGGAAGGGAAGCATCGTTGTTGGC
TACGAAGTGACCGGCTCCACTAGCCCTCCAGAACTCCTCTTTGCCATTGAACAGGAGGCCGAAAAGGCAC
AGGAGGCCCTAAGGAGGCAGTTTCCAGTCAAATATGGCTCTTTTCGAGTATTCGGGAAAGCTCCGTGTAA
CAGCATCTCCTTTGGATTCGGGTCTGAGAATGATGAATATACTGTGCCCTGCAGCAGTGGCTTCACAGGA
AGCATGACGGTCAGGTGCCAGTCCTCTGGGTGGCAGATCACCAGGGAGTCCTGTGTGCTTTCTCAGCTGG
AAGAACTGAAGAAGGAGCTCAGGATGATCGCAGGCAAGATCACAGAGGCGGGTGTGGCATCTTTGGTGCA
AAACCTTTCCACCATCCTTTTGCAAAGTCCATCGACCACAGTTGGGAACCTGGGCTCTGTGGTGTCACTT
CTGAGCAACATTTCATCCCTGTCGCTGGCAAACTCTTTAACTGTGTCCAATCTGACACTGATGAACGTCA
TCAACATAGCTGATCATATCCTGGATTCAGCCTCCATAACGAACTGGACAATTTTATTACAAGATGCAAA
GGATGCCAGCTCCCAGCTACTAAAGACATTGGAAAGCATCAGTAGTCTCATCCCTTCCATGGCTCTGCCT
CTTAATTTTTCTGGAAAATTCATTGACTGGAAAGGGACCCCAGTGACCCAAATCCAGAGCACACGGGGCT
ACAACTATCAGATGGAAATGAGACAAAATGCCTCTCTGCCTATCCGAGGCCACGTGTTTATTGAACCAGA
TCAATTCCAGAAATCGCATCCAAAGACTATTATCAGCATGGCCTCATTGACCTTTGGGGACATTCTACCC
ATTACCCAGAGAGGAAATGCATGGGTCAATGGCCCAGTGATATCCACACTTATTCAAAACTATTCCATCA
GCGAAATTTTCCTGAACTTTTCCAAAATAAAGGGAAACCTGACTCAGCCTCGCTGTGTGTTTTGGGATTT
TAGCCAGTTGCAATGGAGCAATGCAGGCTGCCAACTGGTTAATGAAACTCTGGACACGGTACTGTGCCGA
TGTAGTCACCTGACCTCTTTCTCCATGCTCATGTCACCCTTTGTCCCCTCTTCTGTTGTTCCTGTGGTAA
AATGGATCACGTACATAGGGCTGAGCATCTCCATTGCAAGTCTAATCTTATGCTTGATCATCGAGTCTCT
GTTTTGGAAGCAGACCAAGAGAAGCCAAACCTCCTACACACGCAACATTTGCCTGGTGAACATCGCCGTG
TCACTCTTAATTGCTGATGTTTGGTTTATCATTGCTGCCACTGTGGACCCCTCTGTGAGTCCTTCTGGAG
TCTGTGTGGCTGCGGTGTTCTTTACCCACTTTTTCTACCTTGCCGTATTCTTTTGGATGCTCGTTCTGGG
CATCCTGCTGGCTTATCGAATTATCCTAGTGTTTCATCACATGGCTCTGACTACCATGATGGCTATTGGC
TTTTGCCTAGGCTATGGGTGCCCTCTCCTTATATCCATCATCACCCTTGCTGTCACCCAACCTAGCAATA
GCTATAAAAGGAACGATGTGTGTTGGCTTAACTGGTCTGACAAGAGCAAACCTCTCTTGGCGTTCGTTGT
TCCCGCGTTGACTATTGTGGCTGTGAACTTGGTTGTGGTGTTGCTGGTCCTCAGGAAGCTTTGGAGGCCA
GCAGTTGGAGAAAGACTGAATCAGGATGACAAGGCCACTGCCATCCGCATGGGAAAGAGCCTCCTCGTGC
TGACCCCGTTGCTAGGGCTCACCTGGGGCTTTGGCATAGGAACAATGGCGAACAGCCACAATCTGGCTTG
GCATGTTCTTTTTGCTTTACTCAATGCTTTCCAGGGATTTTTCATCTTCTGTTTTGGAATTCTCCTGGAT
ACCAAGCTGCGGCAACTTCTGTCCAACAAGTTGACTACATTAAGTTCATGGAAGCAAACATCAAAACGGA
ACGCCTCAGATACAGTTACTCAGCCGAAATGCTTAAGGACATTCAACATACTACAGCACAGAGGCATGTA
TGCACTTTCTCATACTGGAGATTCGTCCAGTGACATCACATTAACCCAGTTTCTATCAACCGAATAA

Translation (908 aa):
MRIGLLWLVPLFTLTEGTDGFLQQKNDGRRTKEIVSMVEERHPVHEYEVLLQVTYRDPEEKRELKRFLKL
LKSPSPSLRGPSKIIRVKATTYCRSRKGFLECACEDSYTWFPPSCLDPQNCCLHTTGPVPSCNCSLRGLR
QSINFCERAKVWGTFEIDEKFPEDLWNSSSDVYAHYTVGIENQLKEAYRRVHGFESVRVTQFRKGSIVVG
YEVTGSTSPPELLFAIEQEAEKAQEALRRQFPVKYGSFRVFGKAPCNSISFGFGSENDEYTVPCSSGFTG
SMTVRCQSSGWQITRESCVLSQLEELKKELRMIAGKITEAGVASLVQNLSTILLQSPSTTVGNLGSVVSL
LSNISSLSLANSLTVSNLTLMNVINIADHILDSASITNWTILLQDAKDASSQLLKTLESISSLIPSMALP
LNFSGKFIDWKGTPVTQIQSTRGYNYQMEMRQNASLPIRGHVFIEPDQFQKSHPKTIISMASLTFGDILP
ITQRGNAWVNGPVISTLIQNYSISEIFLNFSKIKGNLTQPRCVFWDFSQLQWSNAGCQLVNETLDTVLCR
CSHLTSFSMLMSPFVPSSVVPVVKWITYIGLSISIASLILCLIIESLFWKQTKRSQTSYTRNICLVNIAV
SLLIADVWFIIAATVDPSVSPSGVCVAAVFFTHFFYLAVFFWMLVLGILLAYRIILVFHHMALTTMMAIG
FCLGYGCPLLISIITLAVTQPSNSYKRNDVCWLNWSDKSKPLLAFVVPALTIVAVNLVVVLLVLRKLWRP
AVGERLNQDDKATAIRMGKSLLVLTPLLGLTWGFGIGTMANSHNLAWHVLFALLNAFQGFFIFCFGILLD
TKLRQLLSNKLTTLSSWKQTSKRNASDTVTQPKCLRTFNILQHRGMYALSHTGDSSSDITLTQFLSTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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