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Report for CCDS18871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18871.1 Public Mus musculus 4 Clcnka 23 108 98 CCDS HistoryNCBI Gene:12733Re-query CCDS DB by CCDS ID:18871.1Re-query CCDS DB by GeneID:12733See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18871.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042617.13 ENSMUSP00000048520.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042617.13Link to Ensembl Protein Viewer:ENSMUSP00000048520.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042617Re-query CCDS DB by Protein ID:ENSMUSP00000048520
Original member Current member EBI ENSMUST00000105790.7 ENSMUSP00000101416.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105790.7Link to Ensembl Protein Viewer:ENSMUSP00000101416.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105790Re-query CCDS DB by Protein ID:ENSMUSP00000101416
Original member Current member NCBI NM_001146307.1 NP_001139779.1 Accepted alive Link to Nucleotide Sequence:NM_001146307.1Link to Protein Sequence:NP_001139779.1Re-query CCDS DB by Nucleotide ID:NM_001146307Re-query CCDS DB by Protein ID:NP_001139779Link to BLAST:NP_001139779.1
Original member Current member NCBI NM_024412.3 NP_077723.3 Accepted alive Link to Nucleotide Sequence:NM_024412.3Link to Protein Sequence:NP_077723.3Re-query CCDS DB by Nucleotide ID:NM_024412Re-query CCDS DB by Protein ID:NP_077723Link to BLAST:NP_077723.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139779.1 687 Q9WUB7 687 100% 0 0
NP_077723.3 687 Q9WUB7 687 100% 0 0

Chromosomal Locations for CCDS 18871.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141384901 141384948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141385277 141385363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141387073 141387156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141387289 141387377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141388134 141388267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141389317 141389530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141390077 141390187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141390342 141390411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141391346 141391519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141391773 141391857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141392525 141392626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141392741 141392825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141394413 141394538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141394959 141395037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141395119 141395196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141395596 141395735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141396514 141396642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141397230 141397358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141397949 141398048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGGAAGAGCTGGTGGGGCTGCGTGAGGGCTCCTCCGGGAAGCCGGTGACTCTGCAAGAGCTATGGGGTC
CGTGTCCACGCATCCGCCGAGGCATCAGAGGGGGCCTAGAGTGGCTGAAAGAGCGGCTGTTCCGTGCGCG
TGAGGACTGGTACTTCCTGGTGGCTCTTGGGGTGCTCATGGCTCTGATCAGCTATGCCATGAACTTTGCT
ATCGGGCGTGTGGTCAGAGCACACAAGTGGCTGTACAGAGAAGTTGGGGACGGCCACCTGCTCCGGTACC
TCTCCTGGACCGTGTACCCCGTAGCTCTTCTGTCCTTCTCCTCCGGCTTCTCACAGAGCATTACGCCCTT
CTCTGGAGGGTCTGGACTCCCAGAGCTGAAGACCATGCTGTCTGGAGTAGTCCTGGAGAACTACCTAGAC
ATCAAGAACTTCGGGGCCAAGGTGGTGGGCCTCTCCTGCACCCTGGCCACAGGCAGCACCATCTTCCTAG
GCAAAGTGGGCCCGTTCGTGCACCTGAGTGTGATGATTTCTGCTTATCTGGGCCGCGTGCGCGCCAAAGC
CGTCGGGGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGCTGTCGGCGGCAGCGGCGGTGGGCGTGGCC
ACAGTCTTCGCCGCCCCCTTCAGTGGTGTCCTGTTCAGCATCGAGGTCATGTCCTCTCACTTCTCCGTCT
GGAATTACTGGAGGGGCTTCTTCGCTGCCACCTGTGGGGCCTTCATGTTCCGTCTCCTGGCGGTCTTCAA
CAGTGAACAGGAGACCATCACCTCCATCTACAAGACCAGATTCCGAGTGGATGTGCCCTTTGACCTGCCT
GAAATCTTCTTCTTTGTGGCTCTGGGGTTCATCTGCGGGATCCTCAGTTGCGTTTACCTGTTCTGTCAGC
GAAATTTTCTCCGCTTCATCAAGACCAATCGCTACACCTCCAAACTGCTGGCTACAAGCAAGCCTTCCTA
CGCAGCTCTGGTCGCGCTGGTCCTGGCTTCAGTCACCTATCCTCCTGGTGTGGGCCGTTTCATGGCTTCC
CGGCTGTCCATGGCGGAACACTTGCACTCTCTGTTTGACAACAACTCGTGGGCGTTGATGACTCGGAATG
CGTCCCCACCCTGGCCTTCTGAGCCCGACCCCCAGAACCTGTGGTTTGAATGGTACCACCCACGGTTCAC
CATCTTTGGGACGCTGGCCTTCTTCCTGATCATGAAGTTCTGGATGCTGATTCTGGCCACCACGATCCCC
ATGCCTGCAGGCTACTTCATGCCTATATTCATCATCGGAGCTGCCATCGGGCGCCTCTTGGGAGAGGCCC
TGTCTGTCGCCTTCCCAGAGGGCATTGTGGCTGGCGGAGAGGTCTATCCCATCATGCCTGGGGGCTATGC
TCTGGCAGGTGCTGCTGCCTTCTCCGGAGCAGTGACCCACACCATCTCCACAGCGCTGCTGGCCTTTGAG
CTGACTGGCCAGATCGTTCACGCACTGCCTGTGCTGATGGCTGTGCTGGCGGCCAATGTCATCTCCCAAA
ACTTACAGCCCTCTTTCTACGATGGCACCATCATGGCCAAGAAACTGCCGTACCTGCCGTGGATCCGTGG
CCGACAGATTGGCTCCTACCCTGTAACGGTGGAACATTTCATGAACTCTAACCTCACCACACTGGCCAAG
GACATGCCCCTGGAGGAGGTGGTCAAGGTGGTGACCTCCACAGATGTGTCTCAGTATCCCTTGGTGGAGA
CCAGAGAGTCTCAGACCCTGGTGGGCATTGTGGAAAGGACCCACTTGGTGCAAGCCCTTCAGACCCAGCC
AGCTTCCTGGGCTCCAGGCCAAGAGCGATTTCTCCAGGACATCTTGGCTGGTGGCTGCCCCACACAGCCA
GTGACCCTGCAGCTGTCCCCAGAGACCTCCCTATATCAGGCACACAGGCTCTTTGAGCTGCTGACCCTTC
AGGCGCTGTTCGTGACGTCACGGGGCAGAGCTGTGGGCTCTGTGTCCTGGGTGGAGCTGAAGAAAGCCAT
TTCCACCTTGATCAACCCACCAGCCCCCAAGTGA

Translation (687 aa):
MEELVGLREGSSGKPVTLQELWGPCPRIRRGIRGGLEWLKERLFRAREDWYFLVALGVLMALISYAMNFA
IGRVVRAHKWLYREVGDGHLLRYLSWTVYPVALLSFSSGFSQSITPFSGGSGLPELKTMLSGVVLENYLD
IKNFGAKVVGLSCTLATGSTIFLGKVGPFVHLSVMISAYLGRVRAKAVGDTESKAKEVEMLSAAAAVGVA
TVFAAPFSGVLFSIEVMSSHFSVWNYWRGFFAATCGAFMFRLLAVFNSEQETITSIYKTRFRVDVPFDLP
EIFFFVALGFICGILSCVYLFCQRNFLRFIKTNRYTSKLLATSKPSYAALVALVLASVTYPPGVGRFMAS
RLSMAEHLHSLFDNNSWALMTRNASPPWPSEPDPQNLWFEWYHPRFTIFGTLAFFLIMKFWMLILATTIP
MPAGYFMPIFIIGAAIGRLLGEALSVAFPEGIVAGGEVYPIMPGGYALAGAAAFSGAVTHTISTALLAFE
LTGQIVHALPVLMAVLAANVISQNLQPSFYDGTIMAKKLPYLPWIRGRQIGSYPVTVEHFMNSNLTTLAK
DMPLEEVVKVVTSTDVSQYPLVETRESQTLVGIVERTHLVQALQTQPASWAPGQERFLQDILAGGCPTQP
VTLQLSPETSLYQAHRLFELLTLQALFVTSRGRAVGSVSWVELKKAISTLINPPAPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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