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Report for CCDS48496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48496.1 Public Mus musculus 10 Zc3h12d 23 108 98 CCDS HistoryNCBI Gene:237256Re-query CCDS DB by CCDS ID:48496.1Re-query CCDS DB by GeneID:237256See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039484.5 ENSMUSP00000040217.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039484.5Link to Ensembl Protein Viewer:ENSMUSP00000040217.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039484Re-query CCDS DB by Protein ID:ENSMUSP00000040217
Original member Current member NCBI NM_172785.3 NP_766373.2 Accepted alive Link to Nucleotide Sequence:NM_172785.3Link to Protein Sequence:NP_766373.2Re-query CCDS DB by Nucleotide ID:NM_172785Re-query CCDS DB by Protein ID:NP_766373Link to BLAST:NP_766373.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766373.2 533 Q8BIY3 533 97.1857% 0 15

Chromosomal Locations for CCDS 48496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7839835 7840148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7853188 7853327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7862386 7862620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7866228 7866334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7867264 7868069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGAGCATCGGAGCAAGATGGAATTTTTCCAGAAACTGGGCTACAGCCAGGAGGACGTGGTCAGGGTGC
TGGGCAAACTGGGTGACAGTGCCTTGGTCAATGACGTGCTTCAAGAGTTGATCCAGACCGGCAGTCGCCC
AAGGGCCCAGGAGGATCCAGCCAGTGGCACCGGGGTAGTGCTGATTCCCCGGGGATGCTGCGGGGTCCAA
GACTCTGCCCAGCAGGGCCTGGGACCAGGCCTAGAAGAGGCTGGCGGAGATCCAGCCCGCTTCCTGCGGC
CCATAGTGATCGATGGCAGCAATGTGGCTATGAGCCATGGAAATAAAGAAGCCTTCTCTTGCCGGGGAAT
TCGTCTGGCTGTGGACTGGTTTAGAGACAGAGGACACACCTACATCAAGGTTTTTGTCCCATCTTGGAGG
AAAGAGCCATCAAGGTCTGATACTCCTATCAGAGAGCAACACGTGCTGGAGGAACTGGAGCGGCAAGCTG
TGTTGGTGTATACCCCATCCCGCAAGGTGAACGGCAAGCGAGTGGTCTGCTACGATGACCGCTACATCGT
GAAGGTGGCCTATGAGAAGGATGGCATCATTGTCTCCAATGACAACTACCGAGACCTGCAGAACGAAAAC
CCAGAGTGGAAATGGTTCATCGAGCAGCGGCTGCTCATGTTCTCCTTTGTAAATGACAGGTTCATGCCTC
CTGATGACCCCCTGGGCCGCCGTGGACCAACACTAAGCAACTTCCTAAGCAAGAAGCCAAGGCCCCCAGA
GCCATCCTGGCAACACTGTCCCTATGGCAAGAAATGCACCTACGGGGTCAAGTGCAGATTCTACCACCCC
GAGAGACCACACCATGGGCAGCTGTCTGTGGCCGACGAACTCCGTGCCAAGACGCGGGCCTGGCTGGGTG
GTGGCGCCGAGGAGCCGCGGACACCGAGCGCCCGGAGCCGTCCTACAACAGCCCGGCTGCTTCCCCAGGA
GCCCGGCGAGCACGACCTCCCGCCAGCCCCGCAGCCCGCGGTCCTGGCAGCTTTGAATAGGAGCTTCGCT
CGGCTCACCTTCAGCGACACCGCGGCCAGCGGCGTCGTGTCTCAGTCTCGTGGGCCGGACTGGATGCCCA
CGGGTGTCCCCACGTCCTGGGCCCCACCATCCCTTCGCGCGGGCAGCGCTGCCACCATAGGGTTGCCAGG
TATGCGGAGCCTCCGGACTCCGAACAACCCGCTTTCTCCGGGCGATCTCGGGTCTCCAATCTGCCCACAG
GCCCGGCTGTCGGAGAGACACCGTTCCAGGGACATGCACAGTGACCTGCCTCCCCAGCGCAGACCGCTGG
AAGATCCGTGGGCTCTCCTGCCCAGCTCCTATTGTTATCTGAACCACTCGGTCTGGTCCGAGTCGGCTTG
GGGTGAGGACATCTTTAGAGGACCTTCGGAGTCAGCACAACCTGTCGCCAATGGTGGGGGAACACGCCCT
GTGCACTGCAGCTTCTTCCCACCTGACCAAGACCACCCTGTGATGGCCTCGGGTCCTCCGCTCTCCGACA
TGGCTCTGCTCACCCTCCTGCAGAGATCCCAAAAGACCGGTGCTCCGTTGGGGGATCCTTAG

Translation (533 aa):
MEHRSKMEFFQKLGYSQEDVVRVLGKLGDSALVNDVLQELIQTGSRPRAQEDPASGTGVVLIPRGCCGVQ
DSAQQGLGPGLEEAGGDPARFLRPIVIDGSNVAMSHGNKEAFSCRGIRLAVDWFRDRGHTYIKVFVPSWR
KEPSRSDTPIREQHVLEELERQAVLVYTPSRKVNGKRVVCYDDRYIVKVAYEKDGIIVSNDNYRDLQNEN
PEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFLSKKPRPPEPSWQHCPYGKKCTYGVKCRFYHP
ERPHHGQLSVADELRAKTRAWLGGGAEEPRTPSARSRPTTARLLPQEPGEHDLPPAPQPAVLAALNRSFA
RLTFSDTAASGVVSQSRGPDWMPTGVPTSWAPPSLRAGSAATIGLPGMRSLRTPNNPLSPGDLGSPICPQ
ARLSERHRSRDMHSDLPPQRRPLEDPWALLPSSYCYLNHSVWSESAWGEDIFRGPSESAQPVANGGGTRP
VHCSFFPPDQDHPVMASGPPLSDMALLTLLQRSQKTGAPLGDP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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