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Report for CCDS48532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48532.1 Public Mus musculus 10 Trdn 23 108 98 CCDS HistoryNCBI Gene:76757Re-query CCDS DB by CCDS ID:48532.1Re-query CCDS DB by GeneID:76757See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 48532.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095762.4 ENSMUSP00000093436.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095762.4Link to Ensembl Protein Viewer:ENSMUSP00000093436.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095762Re-query CCDS DB by Protein ID:ENSMUSP00000093436
Original member Current member NCBI NM_029726.2 NP_084002.2 Accepted alive Link to Nucleotide Sequence:NM_029726.2Link to Protein Sequence:NP_084002.2Re-query CCDS DB by Nucleotide ID:NM_029726Re-query CCDS DB by Protein ID:NP_084002Link to BLAST:NP_084002.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084002.2 693 E9Q9K5-1 693 100% 0 0

Chromosomal Locations for CCDS 48532.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 33083724 33083745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33139074 33139283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33157013 33157174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33158246 33158278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33175769 33175828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33183954 33184016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33186641 33186700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33195949 33196125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33200163 33200222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33233855 33233926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33257075 33257137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33258087 33258140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33305037 33305090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33321305 33321334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33332436 33332465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33333232 33333249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33334982 33335014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33335140 33335166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33337513 33337539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33343076 33343123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33363978 33364022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33398381 33398431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33399095 33399145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33433701 33433730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33437718 33437747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33438792 33438818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33439175 33439222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33442888 33442932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33444054 33444074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33444724 33444750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33445420 33445458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33446988 33447032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33450979 33451002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33464558 33464596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33466423 33466461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33468156 33468194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33471566 33471604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33474379 33474518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2082 nt):
ATGACTGAGATCACTGCTGAAGGAAATGCATCGACAACCACAACGGTGATAGACAACAAAAATGGATGTA
TTCCTAAATCCCCTGGAAAGGTGCTGAAGAGGTCTGTCACCGAAGACATTGTGACAACATTCAGCTCCCC
TGCAGCCTGGCTTCTTGTCATCGCTCTGATTATCACATGGTCAGCTGTTGCTATCGTGATGTTTGATTTA
GTGGATTATAAAAACTTTTCAGCAAGCTCCATTGCCAAGATTGGCTCAGATCCTCTAAAACTAGTGAATG
ATGCTGTGGAGGAGACAACAGACTGGATCTATGGCTTCTTCTCTTTGCTATCTGACATCATCTCATCTGA
AGGTGACGAAGATGATGAGGATGCAGATGAAGACATTGATAAAGGAGAAATAGAAGAACCTCCCTTAAAA
AGAAAAGAAATACACCAAGAAAAGGCTGAAAAAGAGGAGAAACCTGAGAAGAAAATACAAACTAAAGCTT
CACACAGAGAAAGGGAGAAAGGAAAAGAAAAATTAAAAGGAGAAAAACCTGAGAAGACAGCAACTCACAA
AGAGAAACTTGAGAAAAAAGAAAGACCAGAGACGAAGATGATGGCAAAAGAGGACAAGAAAATTAAGACT
AAGGAAAAGACTGAAGAAAAGGCTAAGAAGGAAATGAAAGTTGGAAAACAGGAGAAAGTGAAACCAACAG
CTGCAAAAGCCAAAGAAACTCCGAAAACACCACCAAAGGCCAGAAAGAAGGATGACAAAGAGATGCCAGC
TGTGCATGAGCAGAAAGATCAGTATGCATTCTGTCGATATATGATTGACATGTTTGTCCATGGGGATTTA
AAACCAGGACAAAGCCCAGTTATGCCACCACCATCATTGACACCTTCCAAACCTGCTTTGTCAACAACGG
CCCTTGAAGAAAAAGAAAAAGAAGAGAAGAAGAAAATGGAGAAGAAAGATACTTCTGATACAAAAAAGAA
AGAAAAAGAAGTCAAAAAGAAAAGTGAAGAAACTACCATTGATGGGAAAGGCAAAGAACCAGGCAAACCT
CCTGAAACCAAACAAATGACCGCCAAACTCACAACACAAGCTGCAGCTAGAAAGGATGAGAAGAAAGAAG
AATCAAAGAAAATGAGAAAACCTACAGAAGAACAACCCAAGGGAAAAAAACAGGAAAAGAAAGAAAAGCA
CATAGAACCAGCAAAGACACCAAAAAAGGAACATCCAGGTCCAAGTGAAAAACTCAAAAAAGCAAAAGCT
GAACAAGCCAAGGAAGAGATTGCTGCTGCCTCAACAAAAAAGGCCCTGCATGGAAAGAAAGAAGAGAAAG
CCAAGACAGTCGAGCAAGAAGTGAAAAAAGAAAAATCTGGGAAGAGTTCTTCAGATTTGAAAGATAAAGA
AGTGAAAAAAGAAAAGTCTGGGAAGAGTTCTTCAGATTTGAAAGATAAAGAGCCACAACTAAAAAACGAA
GAGAAGTCAAAGCCACAAGTGAAAAAGGAAGCAAAACTAGCATCATCTGACAAAGGCCAAACACGCAAAC
AGAACATCACCAGACCAGAGCAAGTTATTCCTCATGTTAAACCAGAAAAAGCTGAACACCAAGAAAAAGG
CCACCCATCTATAAAAAAAGATAAGCCTAAACCATCTTCAAAGGGAGCACCAGAAGTTCCAGACTCAGGG
AAGAAGAAGATTGAAAAATCTGAAAAGGAAAGTAAAGTTCCAACAAGAGAAGAAAATCTTCAGGTGTACA
ATGTGACTAAAGCAGAAAAACCTGGAAAAATACCAAAAGATTCCAAAGAAGCACCAGCTTCAAAGAAAGA
TAAAGAAGATTCCAAAGAAGCACCAACTTCAAAGAAAGATAAAGAAGACTCCAAAGATGTCCCACATTCA
AAGAAAGATAAAGAAGTAACTGATGATGTATCTTCACCAAAGAAGCAAACACGTCCCATCAGCTTCTTCC
AATGTGTGTACTTGAATGGGTACAATGGCTATGGGTTTCAGTTTCCTGTCACTCCTGTCCAACAACCTGG
AGAGAACCCTGGCAAAACAAACTCTCCAGGACAGAAGCAACAAGAACAATAG

Translation (693 aa):
MTEITAEGNASTTTTVIDNKNGCIPKSPGKVLKRSVTEDIVTTFSSPAAWLLVIALIITWSAVAIVMFDL
VDYKNFSASSIAKIGSDPLKLVNDAVEETTDWIYGFFSLLSDIISSEGDEDDEDADEDIDKGEIEEPPLK
RKEIHQEKAEKEEKPEKKIQTKASHREREKGKEKLKGEKPEKTATHKEKLEKKERPETKMMAKEDKKIKT
KEKTEEKAKKEMKVGKQEKVKPTAAKAKETPKTPPKARKKDDKEMPAVHEQKDQYAFCRYMIDMFVHGDL
KPGQSPVMPPPSLTPSKPALSTTALEEKEKEEKKKMEKKDTSDTKKKEKEVKKKSEETTIDGKGKEPGKP
PETKQMTAKLTTQAAARKDEKKEESKKMRKPTEEQPKGKKQEKKEKHIEPAKTPKKEHPGPSEKLKKAKA
EQAKEEIAAASTKKALHGKKEEKAKTVEQEVKKEKSGKSSSDLKDKEVKKEKSGKSSSDLKDKEPQLKNE
EKSKPQVKKEAKLASSDKGQTRKQNITRPEQVIPHVKPEKAEHQEKGHPSIKKDKPKPSSKGAPEVPDSG
KKKIEKSEKESKVPTREENLQVYNVTKAEKPGKIPKDSKEAPASKKDKEDSKEAPTSKKDKEDSKDVPHS
KKDKEVTDDVSSPKKQTRPISFFQCVYLNGYNGYGFQFPVTPVQQPGENPGKTNSPGQKQQEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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