NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57351.1 Public Mus musculus 5 Spata18 23 108 98 CCDS HistoryNCBI Gene:73472Re-query CCDS DB by CCDS ID:57351.1Re-query CCDS DB by GeneID:73472See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071077.13 ENSMUSP00000064308.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071077.13Link to Ensembl Protein Viewer:ENSMUSP00000064308.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000071077Re-query CCDS DB by Protein ID:ENSMUSP00000064308
Original member Current member NCBI NM_178387.3 NP_848474.2 Accepted alive Link to Nucleotide Sequence:NM_178387.3Link to Protein Sequence:NP_848474.2Re-query CCDS DB by Nucleotide ID:NM_178387Re-query CCDS DB by Protein ID:NP_848474Link to BLAST:NP_848474.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848474.2 537 Q0P557-1 537 100% 0 0

Chromosomal Locations for CCDS 57351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 73651586 73651672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73657495 73657600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73657743 73657858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73659228 73659334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73666852 73666947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73668522 73668728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73669439 73669733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73671112 73671273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73672338 73672513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73675216 73675339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73676939 73677022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73678992 73679037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73679348 73679355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGCAGAAAGCCTGAAGAAGCTGGCCAAAAGCGAATCTTTACAAGCACTGCAGGATAAAGTCACCTACT
GGGTGAACGACTACAACTCAAACTCCTGTGATCAAAATCTAAATTATTGCATCGAACTCATCGAACAAGT
TGCTAAAGTGCAGGCACAGCTCTTTGGGATCCTCACAGTGACAGCCCAAGAAGGGGGAAATAATGAAGGC
GTGGAGACAATCAAGTGTCGCCTTTTGCCCTTGCTGCAGACTTCCTTCAGTTCTGTAAACATGGGGAAAA
CGGCTGAGTCTGAGATGTGTGCTACACAGGATTTCCAACTTAGAAGTAAAAACAGAGACAATTCTCCGGA
TCAGGACCAACATCAATCAGACAATGAATCGTTCTCAGAGACTCAACCAACCCAGGTTCAAGACGATCTG
GCTGAAAGTGGAAAGAGTCTTGAAGGAGCCAAGAACGGATCAACCATATCCCTCCTGGCTGCAGAGGAGG
AGATAAACCAGCTAAAAAAGCAGCTCAAATCTCTCCAAGCTCAGGAGGACGCCCGCCACAAAACCTCGGA
GAACCGTCGCTCTGAGGCCTTAAAAAGTGATCATCGATCAACCAAACGAACCCAGGACCAACGGCCCCAA
GACGTGGTGTCCAACTATGAGAAACATCTGCAAAATCTGAAGGAAGAGATAGCTGTCCTGTCTGCTGAGA
AAAGTGGTCTCCAGGGGAGGTCTGCCAGGAGCCCATCTCCTAGCACAGGCACCCGCAGCCACCGTCGCGG
CCGCAGCCGTAGCCACAGCCGCAGCCGCAGCCACAGCCGGTCCAATAGCCCCTGCACCACAGTGGCCAAG
ATCAGAAGCCCGTCCCCAAACCGTGCCAAAATGTCCAGCGTGGCTCGCAAAGCTGCTCTCCTGTCCCGAT
TCAGCGACGCCTATTCCCAGGCCCGTCTGGATGCTCAGTGCTTGCTGAGGCGTTGCATCGACAGGGCAGA
GACGGTGCAGCGGATCATTTACATCGCCACAGTGGAGGCATTTCATGTAGCTAAAATGGCATTCAGGCAT
TTCAAGATCCGGGTGAGGAAGATGCTGACGCCATCGAACGTGGGATCTAATACTGACTTTGAGACCGCAG
TCTCCGAATACATTGTTTGCCACCTGGACCTGTATGACTCGCAAAGCAGTGTCAATGATGTGATCCGTGC
CATGAACGTCAACCCCAAGATCTCATTCCCTCCTGAAGTTGACTTCTGCCTCCTCACTGACTTCATCCAG
GAGATTTGCTGCATTGCTTTTGCAATGCAGTCCTTAGAGCCACCCCTCGATATCGCATTCGGGGCAGATG
GGGAAATCTTTAACGATTGCAAGTACCGCCGCAGCTATGACTCGGACTTTACTGCTCCCTTGGTCTTTTA
TCACGTGTGGCCTGCTCTCATGGAGAATGACTGTGTCATTATGAAGGGAGAAGCTGTCACCAAAAGAGGG
GCTTTTTGGAGTTCCGTGCGACCAGTAATGCGGTGCCGTAGCAGGAGCTTAAGCCCCATTTGTCCTCGTA
ATCATTTTGGAATAAGCACGGTATCTCGAAGTCGAAGCCCTTCTCCAATAAGATGTACATTCGCAAGGTA
CTGA

Translation (537 aa):
MAESLKKLAKSESLQALQDKVTYWVNDYNSNSCDQNLNYCIELIEQVAKVQAQLFGILTVTAQEGGNNEG
VETIKCRLLPLLQTSFSSVNMGKTAESEMCATQDFQLRSKNRDNSPDQDQHQSDNESFSETQPTQVQDDL
AESGKSLEGAKNGSTISLLAAEEEINQLKKQLKSLQAQEDARHKTSENRRSEALKSDHRSTKRTQDQRPQ
DVVSNYEKHLQNLKEEIAVLSAEKSGLQGRSARSPSPSTGTRSHRRGRSRSHSRSRSHSRSNSPCTTVAK
IRSPSPNRAKMSSVARKAALLSRFSDAYSQARLDAQCLLRRCIDRAETVQRIIYIATVEAFHVAKMAFRH
FKIRVRKMLTPSNVGSNTDFETAVSEYIVCHLDLYDSQSSVNDVIRAMNVNPKISFPPEVDFCLLTDFIQ
EICCIAFAMQSLEPPLDIAFGADGEIFNDCKYRRSYDSDFTAPLVFYHVWPALMENDCVIMKGEAVTKRG
AFWSSVRPVMRCRSRSLSPICPRNHFGISTVSRSRSPSPIRCTFARY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH