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Report for CCDS25327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25327.1 Public Mus musculus 11 Pcgf2 23 108 98 CCDS HistoryNCBI Gene:22658Re-query CCDS DB by CCDS ID:25327.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018681.13 ENSMUSP00000018681.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018681.13Link to Ensembl Protein Viewer:ENSMUSP00000018681.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018681Re-query CCDS DB by Protein ID:ENSMUSP00000018681
Original member Current member EBI ENSMUST00000103148.7 ENSMUSP00000099437.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103148.7Link to Ensembl Protein Viewer:ENSMUSP00000099437.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103148Re-query CCDS DB by Protein ID:ENSMUSP00000099437
Original member Current member EBI ENSMUST00000169807.7 ENSMUSP00000126967.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169807.7Link to Ensembl Protein Viewer:ENSMUSP00000126967.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169807Re-query CCDS DB by Protein ID:ENSMUSP00000126967
Original member Current member EBI ENSMUST00000179765.7 ENSMUSP00000137517.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179765.7Link to Ensembl Protein Viewer:ENSMUSP00000137517.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179765Re-query CCDS DB by Protein ID:ENSMUSP00000137517
Original member Current member NCBI NM_001163307.1 NP_001156779.1 Accepted alive Link to Nucleotide Sequence:NM_001163307.1Link to Protein Sequence:NP_001156779.1Re-query CCDS DB by Nucleotide ID:NM_001163307Re-query CCDS DB by Protein ID:NP_001156779Link to BLAST:NP_001156779.1
Original member Current member NCBI NM_001163308.1 NP_001156780.1 Accepted alive Link to Nucleotide Sequence:NM_001163308.1Link to Protein Sequence:NP_001156780.1Re-query CCDS DB by Nucleotide ID:NM_001163308Re-query CCDS DB by Protein ID:NP_001156780Link to BLAST:NP_001156780.1
Original member Current member NCBI NM_009545.2 NP_033571.1 Accepted alive Link to Nucleotide Sequence:NM_009545.2Link to Protein Sequence:NP_033571.1Re-query CCDS DB by Nucleotide ID:NM_009545Re-query CCDS DB by Protein ID:NP_033571Link to BLAST:NP_033571.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156779.1 342 P23798 342 100% 0 0
NP_001156780.1 342 P23798 342 100% 0 0
NP_033571.1 342 P23798 342 100% 0 0

Chromosomal Locations for CCDS 25327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97689987 97690358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97690961 97691041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97691684 97691779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97691858 97691912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97692027 97692135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97692369 97692419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97692504 97692559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97692726 97692822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97693416 97693527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGCATCGGACCACACGGATTAAAATCACGGAGCTGAACCCTCACCTCATGTGTGCCCTCTGTGGGGGCT
ATTTTATTGATGCCACCACCATTGTGGAATGCTTACATTCCTTCTGCAAAACCTGCATCGTACGCTACTT
GGAGACCAACAAATACTGCCCCATGTGTGACGTCCAGGTCCATAAAACTCGACCACTGCTGAGCATCAGA
TCAGACAAAACCCTCCAGGACATTGTCTACAAGTTGGTGCCTGGGCTTTTTAAAGATGAAATGAAACGGC
GACGGGACTTCTATGCAGCATACCCCCTGACAGAGGTCCCCAACGGCTCCAACGAGGACCGAGGCGAGGT
CCTGGAACAGGAGAAGGGGGCTCTGGGTGACGACGAGATTGTCAGTCTTTCCATTGAGTTCTACGAAGGC
GTCAGGGACCGAGAGGAGAAGAAGAACCTCACGGAGAATGGAGATGGGGACAAGGAGAAGACAGGAGTGC
GATTCCTGCGGTGCCCAGCAGCCATGACCGTCATGCACCTGGCAAAGTTCCTCCGCAACAAAATGGATGT
GCCCAGCAAGTACAAGGTGGAGATCCTCTATGAAGATGAGCCCCTGAAGGAATACTACACCTTAATGGAC
ATTGCGTACATCTACCCCTGGCGAAGGAATGGGCCTCTCCCCCTCAAGTACCGTGTCCAGCCAGCCTGCA
AGCGGCTCACCCTGCCCACGGTGCCAACCCCCTCAGAAGGCACCAACACCAGCGGGGCATCAGAGTGTGA
GTCAGTCAGCGACAAGGCTCCCAGCCCTGCCACCCTTCCGGCCACCTCCTCCTCCTTGCCCAGCCCTGCG
ACCCCATCCCATGGCTCTCCCAGCTCCCACGGCCCCCCAGCTACCCATCCTACTTCCCCCACTCCACCTT
CAACTGCCGCTGGGACCACCACAGCTACCAATGGGGGCACTTCGAACTGCCTGCAAACGCCATCCTCCAC
CAGCAGGGGGCGCAAGATGACTGTTAATGGCGCTCCTTGCCCCCCTTGA

Translation (342 aa):
MHRTTRIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQVHKTRPLLSIR
SDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYPLTEVPNGSNEDRGEVLEQEKGALGDDEIVSLSIEFYEG
VRDREEKKNLTENGDGDKEKTGVRFLRCPAAMTVMHLAKFLRNKMDVPSKYKVEILYEDEPLKEYYTLMD
IAYIYPWRRNGPLPLKYRVQPACKRLTLPTVPTPSEGTNTSGASECESVSDKAPSPATLPATSSSLPSPA
TPSHGSPSSHGPPATHPTSPTPPSTAAGTTTATNGGTSNCLQTPSSTSRGRKMTVNGAPCPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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