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Report for CCDS48899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48899.1 Public Mus musculus 11 Cacnb1 23 108 98 CCDS HistoryNCBI Gene:12295Re-query CCDS DB by CCDS ID:48899.1Re-query CCDS DB by GeneID:12295See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107562.1 ENSMUSP00000103187.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107562.1Link to Ensembl Protein Viewer:ENSMUSP00000103187.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107562Re-query CCDS DB by Protein ID:ENSMUSP00000103187
Original member NCBI NM_001159319.2 NP_001152791.1 Updated not alive Link to Nucleotide Sequence:NM_001159319.2Link to Protein Sequence:NP_001152791.1Re-query CCDS DB by Nucleotide ID:NM_001159319Re-query CCDS DB by Protein ID:NP_001152791
Current member NCBI NM_001159319.3 NP_001152791.1 Accepted alive Link to Nucleotide Sequence:NM_001159319.3Link to Protein Sequence:NP_001152791.1Re-query CCDS DB by Nucleotide ID:NM_001159319Re-query CCDS DB by Protein ID:NP_001152791Link to BLAST:NP_001152791.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152791.1 479 Q8R3Z5-3 479 100% 0 0

Chromosomal Locations for CCDS 48899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98005021 98005314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98005688 98005783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98009281 98009432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98009569 98009678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98009858 98009916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98010296 98010376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98010627 98010646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98011866 98011942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98012185 98012321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98012812 98012934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98016723 98016842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98019680 98019766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98022342 98022425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGTCCAGAAGAGCGGCATGTCCCGGGGCCCTTACCCACCTTCCCAAGAGATCCCTATGGAGGTCTTCG
ACCCCAGCCCACAGGGCAAGTACAGCAAGAGGAAAGGGCGGTTCAAAAGGTCAGACGGGAGTACGTCCTC
GGATACAACATCCAACAGCTTCGTCCGCCAGGGCTCAGCAGAGTCCTACACGAGCCGACCATCAGACTCT
GATGTGTCTCTGGAGGAGGACCGGGAAGCCTTAAGGAAGGAGGCAGAGCGCCAGGCCTTAGCCCAGCTCG
AGAAAGCCAAGACCAAACCAGTGGCTTTTGCTGTTCGGACAAATGTTGGCTACAATCCGTCTCCAGGGGA
TGAGGTGCCTGTACAGGGAGTGGCCATCACCTTTGAGCCCAAGGACTTCCTACACATCAAGGAGAAGTAC
AATAATGACTGGTGGATTGGGCGGCTGGTGAAGGAAGGCTGCGAGGTTGGCTTCATCCCCAGCCCGGTCA
AACTGGACAGCCTTCGTCTGCTGCAGGAACAGACCCTGCGCCAGAACCGCCTCAGCTCCAGCAAGTCAGG
TGACAACTCCAGTTCCAGTCTGGGAGATGTGGTGACTGGCACCCGCCGCCCCACACCCCCTGCCAGTGCC
AAACAGAAGCAGAAATCGACAGAGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCC
TGGTGGGACCGTCGCTCAAGGGCTATGAGGTGACAGACATGATGCAGAAAGCGTTGTTTGACTTCCTCAA
GCATCGGTTTGATGGCAGGATTTCCATCACCCGGGTAACAGCTGACATTTCCCTGGCCAAACGCTCCGTC
CTCAACAACCCCAGCAAACACATCATCATTGAGCGCTCCAACACGCGTTCCAGCCTGGCTGAGGTACAGA
GTGAAATTGAGAGGATCTTCGAGCTGGCCCGGACCTTGCAGCTGGTCGCCTTGGACGCTGACACCATCAA
CCACCCAGCCCAGCTCTCTAAAACGTCGCTGGCCCCCATCATTGTTTACATCAAGATCACATCTCCCAAG
GTACTGCAGAGGCTCATCAAATCCCGAGGGAAGTCTCAATCCAAACACCTCAATGTCCAAATAGCAGCCT
CGGAGAAGCTGGCACAGTGTCCCCCCGAAATGTTTGACATAATCCTGGACGAGAACCAATTGGAAGATGC
CTGCGAGCACCTGGCTGAGTACTTGGAAGCCTACTGGAAGGCCACACATCCGCCTAGCAGCACGCCACCC
AATCCGCTGCTGAACCGCACCATGGCTACCGCAGCTCTGGCTGCCAGCCCTGCCCCCGTCTCCAACCTCC
AGGTACAGGTGCTCACCTCGCTCAGGAGAAATCTCAGCTTCTGGGGCGGGCTGGAGGCCTCACCGCGGGG
AGGCGACGCGGTGGCCCAGCCTCAGGAGCACGCCATGTAG

Translation (479 aa):
MVQKSGMSRGPYPPSQEIPMEVFDPSPQGKYSKRKGRFKRSDGSTSSDTTSNSFVRQGSAESYTSRPSDS
DVSLEEDREALRKEAERQALAQLEKAKTKPVAFAVRTNVGYNPSPGDEVPVQGVAITFEPKDFLHIKEKY
NNDWWIGRLVKEGCEVGFIPSPVKLDSLRLLQEQTLRQNRLSSSKSGDNSSSSLGDVVTGTRRPTPPASA
KQKQKSTEHVPPYDVVPSMRPIILVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSV
LNNPSKHIIIERSNTRSSLAEVQSEIERIFELARTLQLVALDADTINHPAQLSKTSLAPIIVYIKITSPK
VLQRLIKSRGKSQSKHLNVQIAASEKLAQCPPEMFDIILDENQLEDACEHLAEYLEAYWKATHPPSSTPP
NPLLNRTMATAALAASPAPVSNLQVQVLTSLRRNLSFWGGLEASPRGGDAVAQPQEHAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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