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Report for CCDS79440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79440.1 Public Mus musculus 16 Teddm3 23 108 98 CCDS HistoryNCBI Gene:66561Re-query CCDS DB by CCDS ID:79440.1Re-query CCDS DB by GeneID:66561See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79440.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170665.2 ENSMUSP00000141078.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170665.2Link to Ensembl Protein Viewer:ENSMUSP00000141078.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170665Re-query CCDS DB by Protein ID:ENSMUSP00000141078
Original member Current member NCBI NM_025634.3 NP_079910.1 Accepted alive Link to Nucleotide Sequence:NM_025634.3Link to Protein Sequence:NP_079910.1Re-query CCDS DB by Nucleotide ID:NM_025634Re-query CCDS DB by Protein ID:NP_079910Link to BLAST:NP_079910.1

Chromosomal Locations for CCDS 79440.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21152933 21153817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGGAACCTTTGAAGGACACCTGTTGCCAGGACTTGGCCTCCTCATGTATGCAATCTATTATTCGTCGC
TAATGTCCTTGGCCTTGCTCCGGAAACAGAGGATGCTCAAGCACCCCTTGCTCCCAAGGAAGCTGCTGGG
TTGCAGGCTGTTTTTGCCGGTATCCTATGAAGCAGTGGTGAAGGTGGCTATTCCTGCTTTTGCCACTGTT
TGTGAATACTACTACCCCCTAGGGGTCAACCGTCTGAAGATGATAGACTGGAAGGACCCTCGGCGGCTGT
TTGTTTTCAAGGACAACTGGGAGCATGTAACCATGTTTGGGTTCTTTATTCTCAGTGGCATAGCAGACAT
TGTGAGCCAGGCACAACGGGCACCTTGGAGTGTGAAGCTGGAGCGCGCGGCTGAAGCCCTGACTTTCTAT
GTGGTGGCACTGCTGATGATATCCCATATTGAGAACAAAAGCGTCTTGGAGATTCGAGTGCATCTTCTGT
TTGTGTTGCCTGCCTTCTTGCTTGCTCTGCTGCTCACTGTGGAGATCTGGGTCCCTGACAATGCCCCACT
CTGGGTCCTCAAGAGCTGGATGGCACTGGTGTTAAGCACCTGGATGTTGCAGATCTGTGAGATGTATATA
CCTTTCACTGGACAGCCCTGGAGGGCAGACAACCCCACGGACCTGGCATTCATAACCATTTTCTTCTGCT
GGCACCTGGTCTTAGGGCTTACCTTGCTGATTACCATCTATGGCCTCTGCAGTCTCTGGCACCATCACTA
TTCTTCCTGGACAAAGACTCTCGGGGCTAGGTACCAGCGGTGTCTTACGGAATCCAGTAGTGAAGAATTA
GAAAAGCTCAATGCGGAAGCTGTGGCACAGGATGGAGGTGTGTAG

Translation (294 aa):
MGTFEGHLLPGLGLLMYAIYYSSLMSLALLRKQRMLKHPLLPRKLLGCRLFLPVSYEAVVKVAIPAFATV
CEYYYPLGVNRLKMIDWKDPRRLFVFKDNWEHVTMFGFFILSGIADIVSQAQRAPWSVKLERAAEALTFY
VVALLMISHIENKSVLEIRVHLLFVLPAFLLALLLTVEIWVPDNAPLWVLKSWMALVLSTWMLQICEMYI
PFTGQPWRADNPTDLAFITIFFCWHLVLGLTLLITIYGLCSLWHHHYSSWTKTLGARYQRCLTESSSEEL
EKLNAEAVAQDGGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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