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Report for CCDS28216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28216.1 Public Mus musculus 16 Nfkbiz 23 108 98 CCDS HistoryNCBI Gene:80859Re-query CCDS DB by CCDS ID:28216.1Re-query CCDS DB by GeneID:80859See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036273.12 ENSMUSP00000041173.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036273.12Link to Ensembl Protein Viewer:ENSMUSP00000041173.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036273Re-query CCDS DB by Protein ID:ENSMUSP00000041173
Original member Current member EBI ENSMUST00000114458.7 ENSMUSP00000110102.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114458.7Link to Ensembl Protein Viewer:ENSMUSP00000110102.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114458Re-query CCDS DB by Protein ID:ENSMUSP00000110102
Original member Current member NCBI NM_001159394.1 NP_001152866.1 Accepted alive Link to Nucleotide Sequence:NM_001159394.1Link to Protein Sequence:NP_001152866.1Re-query CCDS DB by Nucleotide ID:NM_001159394Re-query CCDS DB by Protein ID:NP_001152866Link to BLAST:NP_001152866.1
Original member NCBI NM_030612.3 NP_085115.1 Updated not alive Link to Nucleotide Sequence:NM_030612.3Link to Protein Sequence:NP_085115.1Re-query CCDS DB by Nucleotide ID:NM_030612Re-query CCDS DB by Protein ID:NP_085115
Current member NCBI NM_030612.4 NP_085115.1 Accepted alive Link to Nucleotide Sequence:NM_030612.4Link to Protein Sequence:NP_085115.1Re-query CCDS DB by Nucleotide ID:NM_030612Re-query CCDS DB by Protein ID:NP_085115Link to BLAST:NP_085115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152866.1 728 Q9EST8-1 728 100% 0 0
NP_085115.1 728 Q9EST8-1 728 100% 0 0

Chromosomal Locations for CCDS 28216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 55812730 55812783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55813950 55814117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55814241 55814351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55815640 55815809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55816068 55816131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55816317 55816463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55816831 55816936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55817729 55818534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55818748 55818851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55818992 55819022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55819567 55819706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55821768 55822053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGATCGTGGACAAGCTGCTGGACGACAGCCGCGGCGGAGAGGGGCTGCTGGACGCGGCCGGCGACTGCG
GCCTCATGACCAGCCCGCTCAACCTGGCTTACTTCTACGGCGCCTCGCCTCCTTCCGCCCCCGGCGCCGG
CGACACCGGCTACCTGTCCGCCGTGCCCTCCGCGCCCGGCTCGCCCGGCTCCGACTCCTCCGATTTCTCC
TCCACTTCCTCCGTGTCCTCCTGCGGGGCCGTGGAGTCCCGTCCCAGAGGTGGCGCCCGCGCCGAGCGCC
CTCAAGTTGAGCCCCACATGGGGGTTGGCAGGCAGCAGAGAGGCCCCTTTCAAGGTGTTCGCGTGAAGAA
CTCGGTGAAGGAGCTCCTGCTACACATCCGAAGCAACAAGCAGAAGGCTTCCGGCCAGCCCGTGGATGAG
TTTAAGACACAGAGTGTGAACATTGAGCAGCTGACAGACCTGAAGAGTGCAGTGTCCGCAGTGGGGAAAA
GAAAGGGACCCGATCCTCTGTCCGATGGACCGGTTTGCAAGAGGCCAGCTCTGTTGCCTTCTCACTTCGT
GACATCACCGCAAACGCCTACACCTGGGGAGAGCATGGAAGATGTTCGCCACAGCGAATCCAAGCTGGAT
AGCAGCGCTGCCCTGCTTCAGAATATTATAAACATCAAGAATGAGTGCAACCCAGTTTCACTAAACACTG
TTCAGGTTAGCTGGATGAGCCCCACGGTTCCCCAGAACTCGCCAAGAGACCAGTGCCAGGATTTCCATGG
AGGCCAGGCCTTCTCTCCACCTCAGAAATACCAACCGTTCCAAGTCAGTGGCTCTCCACAGATGATGGAC
CAGGCGTCAATGTACCAGTATTCGCCACAAACACAGAACATGCAGCAGCCGCCGCCGCTGCCACCACAGC
AGCAACATCAACAGAATTATCCCCACAACTCACCCCTGCAGTTCAGTCCTTACTCCAGAATGTCCCAGTC
TCCCAAGTATGATTCCAACCTCTTTGATACTCACGAGCCACAGTTCTGCACGGGCCAAAGTTTTGTGTCT
TTACTGACTGGCCCGGGGGAACCCGAGTCTCTTGCTGTTCCCGTTCCGGCTCCCACCAGCATTCCACCCC
AAACTGAGACTCAGCTGCAGACCTTCAGCCTGATGCCAAGCAATGCCTGCGAGGCCGTCGTCGGGGTGCA
CGATGTGGGCTCGCACTCTTTGGGCACGTCCCTGTCACTCCAGAACATCATGGGAAGCCCGATGAATACC
ACCCAGCTGGGGAAGTCATTTTTTCAGTGGCAGGTAGAGCAGGAAGAAAGCAAATTGGCAAATATTCCCC
AGGACCAGTTCCTCGCTAGGGACGGAGATGGTGACACGTTTCTCCATATTGCTGTTGCCCAAGGGAGGCG
AGCGCTCTCGTATGTCCTTGCAAGAAAGATGAACGCTCTTCACATGCTGGACATTAAGGAGCACAATGGA
CAGAGTGCCTTTCAGGTGGCGGTAGCTGCCAATCAGCACCTCATTGTGCAAGATCTGGTAAACCTTGGTG
CCCAGGTGAACACCACGGATTGCTGGGGAAGGACACCTCTGCATGTCTGTGCGGAGAAGGGCCACTCCCA
GGTGCTCCAGGCCATCCAGAAGGGAGCTGTGAGGAGCAATCAGTTTGTGGATCTTGAGGCAACGAACTAT
GATGGCCTGACTCCCCTACATTGCGCGGTCGTGGCTCACAATGCGGTGGTGCACGAACTGCAGAGGAATC
GGCAGTCTCATTCGCCCGAAGTGCAGGACCTCTTACTAAGGAATAAGAGCCTGGTAGACACCATTAAGTG
TCTGATTCAGATGGGAGCCGCAGTGGAGGCAAAGGATCGTAAGAGTGGCCGCACAGCCCTGCACTTGGCA
GCGGAAGAAGCAAATCTGGAACTCATTCGCCTCTTTTTGGAGTTGCCCAGTTGCCTGTCTTTCGTGAATG
CCAAGGCTTACAATGGAAACACCGCCCTCCATGTTGCTGCCAGCCTGCAGTATCGGGTGACACAGTTGGA
CGCAGTCCGCCTGTTGATGAGGAAGGGAGCTGACCCCAGTACTCGGAACTTGGAGAATGAACAGCCCGTG
CATTTGGTCCCCGATGGCCCAGTGGGAGAACAGATCCGACGTATCCTGAAGGGGAAGTCCATTCAGCAGC
GAGCACCACCATACTAG

Translation (728 aa):
MIVDKLLDDSRGGEGLLDAAGDCGLMTSPLNLAYFYGASPPSAPGAGDTGYLSAVPSAPGSPGSDSSDFS
STSSVSSCGAVESRPRGGARAERPQVEPHMGVGRQQRGPFQGVRVKNSVKELLLHIRSNKQKASGQPVDE
FKTQSVNIEQLTDLKSAVSAVGKRKGPDPLSDGPVCKRPALLPSHFVTSPQTPTPGESMEDVRHSESKLD
SSAALLQNIINIKNECNPVSLNTVQVSWMSPTVPQNSPRDQCQDFHGGQAFSPPQKYQPFQVSGSPQMMD
QASMYQYSPQTQNMQQPPPLPPQQQHQQNYPHNSPLQFSPYSRMSQSPKYDSNLFDTHEPQFCTGQSFVS
LLTGPGEPESLAVPVPAPTSIPPQTETQLQTFSLMPSNACEAVVGVHDVGSHSLGTSLSLQNIMGSPMNT
TQLGKSFFQWQVEQEESKLANIPQDQFLARDGDGDTFLHIAVAQGRRALSYVLARKMNALHMLDIKEHNG
QSAFQVAVAANQHLIVQDLVNLGAQVNTTDCWGRTPLHVCAEKGHSQVLQAIQKGAVRSNQFVDLEATNY
DGLTPLHCAVVAHNAVVHELQRNRQSHSPEVQDLLLRNKSLVDTIKCLIQMGAAVEAKDRKSGRTALHLA
AEEANLELIRLFLELPSCLSFVNAKAYNGNTALHVAASLQYRVTQLDAVRLLMRKGADPSTRNLENEQPV
HLVPDGPVGEQIRRILKGKSIQQRAPPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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