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Report for CCDS28185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28185.1 Public Mus musculus 16 Sidt1 23 108 98 CCDS HistoryNCBI Gene:320007Re-query CCDS DB by CCDS ID:28185.1Re-query CCDS DB by GeneID:320007See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28185.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000136381.7 ENSMUSP00000115372.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136381.7Link to Ensembl Protein Viewer:ENSMUSP00000115372.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136381Re-query CCDS DB by Protein ID:ENSMUSP00000115372
Original member Current member NCBI NM_198034.3 NP_932151.2 Accepted alive Link to Nucleotide Sequence:NM_198034.3Link to Protein Sequence:NP_932151.2Re-query CCDS DB by Nucleotide ID:NM_198034Re-query CCDS DB by Protein ID:NP_932151Link to BLAST:NP_932151.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932151.2 827 Q6AXF6-1 827 100% 0 0

Chromosomal Locations for CCDS 28185.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 44241637 44241699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44243468 44243581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44245135 44245245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44245333 44245438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44251161 44251207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44254951 44255027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44257933 44258041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44259433 44259569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44261691 44261808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44262019 44262142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44263289 44263362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44265762 44265828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44267001 44267074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44267766 44267911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44269848 44269919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44273741 44273784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44281795 44281888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44282454 44282525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44284212 44284299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44286319 44286402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44287243 44287344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44291250 44291295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44299802 44299972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44300941 44301062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44332307 44332528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2484 nt):
ATGCTGGACTGCCTGCGCCTGGCGCTGCTCTGCGCGCTGCCCTGGCTCCTGCGGGCGGCGGTCCCTGGCC
ACCAGGAAGAGCCCCTCGCGAAATCCGCAGAGCTGCGGCGCGATCCGCGAGACCCCGCCAGGGGAGCGGA
TTTCGATCGCGTCTACAGCGGGGTGGTGAGCCTCAGCACCGAGAACATCTACTCCTTCAACCACACCAGC
CATCCTGGCCAGGTGACAGCCGTGCGGGTGCATGTCAACAGTTCCTCTGACAACCTGGACTACCCAGTCC
TGGTTGTGGTTCGCCAGCAGAAAGAAGTGTTGTCCTGGCAGGTCCCTCTGCTCTTCCAAGGACTATACCA
AAGGAGCTACAACTACCAGGAAGTCAGCCGCACTCTATGCCCTTCAAAAGCAACCAATGAGACGGGCCCT
TTGGAGCAGCTGATCTTTGTAGATGTAGCGTCCATGGCGCCCCATGGTGCCCACTACAAGTTGCTGGTCA
CCAAAATCAAGCACTTCCAGCTCCCGACGAATGTTGCCTTCTACTTCACTGCCAGCCCCTCTCAACCTCA
GTATTTTCTATACAAATTTCCTGAAGACGTGGACTCCGTTATCATTAAAGTGGTGTCTGAGAAGGCTTAC
CCGTGTTCAGTTGTCTCCGTTCAGAACATCATGTGTCCAGTGTATGATCTGGACCACAATGTGGAATTCA
ATGGTGTCTATCAGTCCATGACCAAGAAAGCCGCCATCACGCTGCAGAAGAAGGATTTTCCAGATGAGCA
GTTCTTCGTGGTGTTTGTGATAAAACCTGAAGATTATGCCTGTGGCGGATCATTCTCCATCCAGGAAAAT
GAAAACCAGACCTGGAATCTACAACGATCAAAGAACCTGAAAGTGACCATTGTCCCATCCATCAAAGAAT
CTGTATATGTGAAATCTAGTCTTTTCAGCATATTCGTTTTCTTGTCCTTCTACTTGGGATGCCTGCTCGT
TGTGCTTGTCCATCATGTGAGGTTTCAGAGGAAATCTATTGACGGAAGCTTTGGTTCCAGCGATGGCTCT
GGAAATATGGCTGTCTCACATCCCATCACTGCCAGCACGCCCGAAGGGAGCAATTATGGGGCAATAGATG
AGTCCAGTTCCAGTCCTGGGAGGCAGATGTCTTCTTCCGATGGTGGGCAGCCTTGCCACTCAGACACGGA
CAGCTCTGTGGAGGAGAGTGACTTTGATACCATGCCTGACATCGAAAGCGACAAAAACGTCATCCGGACC
AAGATGTTCTTGTACCTGTCAGATCTGTCCAGGAAGGACCGGAGGATTGTCAGCAAAAAGTATAAGATTT
ATTTTTGGAACATCATCACCATCGCTGTGTTTTATGCACTGCCTGTGATGCAGCTTGTTATCACCTACCA
GACAGTGGTGAATGTCACTGGCAACCAGGATATCTGTTACTACAACTTCCTTTGTGCTCACCCCCTGGGT
GTCCTGAGCGCCTTCAATAATATTCTCAGTAACCTGGGCCACGTACTCCTGGGCTTCCTCTTCCTGCTGA
TAGTTCTGCGCAGAGACCTTCTCCACCGAAGAGCCCTGGAAGCTAAAGACATCTTTGCTATGGAATACGG
TATTCCCAAACACTTTGGTCTCTTCTACGCTATGGGGATAGCACTGATGATGGAGGGCGTGCTCAGTGCT
TGTTACCATGTCTGCCCTAATTACTCCAACTTCCAGTTCGACACTTCCTTCATGTACATGATCGCTGGCC
TCTGCATGCTGAAGCTCTATCAGACCCGCCACCCGGACATCAACGCCAGCGCCTACTCTGCTTATGCCTC
CTTCGCTGTGGTCATCACACTGACGGTCCTCGGAGTGGTGTTTGGAAAAAACGATGTGTGGTTCTGGATC
ATCTTCTCTGCCATCCACATTCTCTCTTCTCTGGCCCTCAGCACCCAAATCTACTACATGGGCCGTTTCA
AGATAGATCTGGGAATCTTCCGGCGGGCTGCTATGGTGTTCTACACGGACTGTATCCAGCAATGCAGCAG
ACCTCTGTATATGGACAGGATGGTGTTGCTCATTGTGGGAAATCTGGTTAATTGGTCCTTTGCCTTCTTT
GGATTGATCTACCGGCCCAGGGACTTTGCCTCCTACATGCTGGGCATCTTCATCTGCAACCTGCTGCTGT
ACTTGGCTTTCTACATCATCATGAAGCTTCGAAGCTCTGAGAAAGTCCTCCCGCTACCAGTCTTCTGCAT
CGCGGCCACTGCCGTGGTGTGGGCTGCGGCACTGTACTTCTTCTTCCAGAACCTCAGCAGCTGGGAGGGG
ACCCCTGCAGAATCCCGGGAGAAGAACCGTGAGTGTGTCCTGCTGGATTTCTTTGATGACCATGACATCT
GGCACTTCCTCTCTGCGACTGCCCTGTTTTTCTCATTCCTGGTGCTGTTGACCCTGGATGATGACCTGGA
TGTGGTCCGGAGAGACCAGATCCCTGTCTTCTGA

Translation (827 aa):
MLDCLRLALLCALPWLLRAAVPGHQEEPLAKSAELRRDPRDPARGADFDRVYSGVVSLSTENIYSFNHTS
HPGQVTAVRVHVNSSSDNLDYPVLVVVRQQKEVLSWQVPLLFQGLYQRSYNYQEVSRTLCPSKATNETGP
LEQLIFVDVASMAPHGAHYKLLVTKIKHFQLPTNVAFYFTASPSQPQYFLYKFPEDVDSVIIKVVSEKAY
PCSVVSVQNIMCPVYDLDHNVEFNGVYQSMTKKAAITLQKKDFPDEQFFVVFVIKPEDYACGGSFSIQEN
ENQTWNLQRSKNLKVTIVPSIKESVYVKSSLFSIFVFLSFYLGCLLVVLVHHVRFQRKSIDGSFGSSDGS
GNMAVSHPITASTPEGSNYGAIDESSSSPGRQMSSSDGGQPCHSDTDSSVEESDFDTMPDIESDKNVIRT
KMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVMQLVITYQTVVNVTGNQDICYYNFLCAHPLG
VLSAFNNILSNLGHVLLGFLFLLIVLRRDLLHRRALEAKDIFAMEYGIPKHFGLFYAMGIALMMEGVLSA
CYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYSAYASFAVVITLTVLGVVFGKNDVWFWI
IFSAIHILSSLALSTQIYYMGRFKIDLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLIVGNLVNWSFAFF
GLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPLPVFCIAATAVVWAAALYFFFQNLSSWEG
TPAESREKNRECVLLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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