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Report for CCDS50194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50194.1 Public Mus musculus 17 Cox7a2l 23 108 98 CCDS HistoryNCBI Gene:20463Re-query CCDS DB by CCDS ID:50194.1Re-query CCDS DB by GeneID:20463See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167741.8 ENSMUSP00000131584.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167741.8Link to Ensembl Protein Viewer:ENSMUSP00000131584.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167741Re-query CCDS DB by Protein ID:ENSMUSP00000131584
Original member Current member NCBI NM_001159529.1 NP_001153001.1 Accepted alive Link to Nucleotide Sequence:NM_001159529.1Link to Protein Sequence:NP_001153001.1Re-query CCDS DB by Nucleotide ID:NM_001159529Re-query CCDS DB by Protein ID:NP_001153001Link to BLAST:NP_001153001.1

Chromosomal Locations for CCDS 50194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 83502603 83502737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83503931 83503999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83504100 83504228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83514204 83514275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGTACTACAAGTTTAGCAGTTTCACGCAGAAGTTGGCTGGAGCTTGGGCTTCGGAAGCCTACACCCCGC
AGGGGTTAAAGCCAGTTTCCACAGAAGCACCACCTATCATATTTGCCACACCAACCAAACTGACCTCCAG
TGTGACAGCATATGATTATTCTGGGAAGAACAAAGTTCCAGAGCTGCAGAAGTTTTTCCAGCCTCCTTTT
CTTAAGGAGAACTCTTTACTTCAGTTTGGTCCGTTGGCTAATAATGGAACCTTTGTACAGAAGGCTGATG
GTTTCCACCTGAAACGAGGCCTTCCAGACCAAATGCTTTACCGGACCACCATGGCTCTGACACTGGGAGG
GACCATCTACTGCCTGATCGCCCTCTACATGGCCTCGCAGCCCAGAAACAAATGA

Translation (134 aa):
MYYKFSSFTQKLAGAWASEAYTPQGLKPVSTEAPPIIFATPTKLTSSVTAYDYSGKNKVPELQKFFQPPF
LKENSLLQFGPLANNGTFVQKADGFHLKRGLPDQMLYRTTMALTLGGTIYCLIALYMASQPRNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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