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Report for CCDS29007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29007.1 Public Mus musculus 17 Six2 23 108 98 CCDS HistoryNCBI Gene:20472Re-query CCDS DB by CCDS ID:29007.1Re-query CCDS DB by GeneID:20472See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29007.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024947.7 ENSMUSP00000024947.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024947.7Link to Ensembl Protein Viewer:ENSMUSP00000024947.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024947Re-query CCDS DB by Protein ID:ENSMUSP00000024947
Original member Current member EBI ENSMUST00000163568.3 ENSMUSP00000125871.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163568.3Link to Ensembl Protein Viewer:ENSMUSP00000125871.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163568Re-query CCDS DB by Protein ID:ENSMUSP00000125871
Original member Current member NCBI NM_011380.2 NP_035510.1 Accepted alive Link to Nucleotide Sequence:NM_011380.2Link to Protein Sequence:NP_035510.1Re-query CCDS DB by Nucleotide ID:NM_011380Re-query CCDS DB by Protein ID:NP_035510Link to BLAST:NP_035510.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035510.1 296 Q62232 296 100% 0 0

Chromosomal Locations for CCDS 29007.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 85685183 85685513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85687393 85687952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGTCCATGCTGCCCACCTTCGGCTTCACGCAGGAGCAAGTGGCGTGCGTGTGCGAGGTGCTGCAGCAGG
GCGGCAACATCGAGCGGCTGGGTCGCTTCCTGTGGTCGCTGCCCGCCTGCGAGCACCTCCACAAGAATGA
AAGCGTGCTCAAGGCCAAGGCCGTGGTGGCCTTCCACCGGGGCAACTTCCGCGAGCTCTACAAAATCCTG
GAGAGCCACCAGTTCTCGCCGCACAACCACGCCAAGCTGCAGCAGTTGTGGCTCAAGGCGCACTACATCG
AGGCGGAGAAGCTGCGCGGCCGGCCGCTGGGCGCCGTGGGCAAGTACCGCGTGCGGCGCAAGTTCCCGCT
GCCCCGCTCCATCTGGGACGGCGAGGAGACCAGCTACTGCTTCAAGGAGAAGAGCCGCAGCGTGCTGCGC
GAGTGGTACGCTCACAACCCCTACCCGTCGCCACGAGAGAAGCGCGAGCTGGCCGAGGCCACCGGCCTCA
CCACCACGCAAGTCAGCAACTGGTTCAAGAACCGGCGGCAGCGCGACAGGGCGGCCGAGGCCAAGGAAAG
GGAGAACAGCGAGAACTCCAATTCCAGCAGCCACAACCCGCTGGCTTCCTCGCTCAATGGCAGTGGCAAG
TCGGTGCTAGGCAGTTCCGAGGATGAGAAGACGCCGTCGGGGACTCCAGACCACTCGTCGTCCAGTCCCG
CTCTGTTGCTCAGCCCGCCGCCGCCCCCTGGGCTGCCTTCCCTGCACAGCCTGGGCCACCCTCCGGGCCC
GAGCGCAGTACCCGTACCAGTGCCCGGTGGAGGCGGCGCGGACCCACTGCAGCATCACCACAGCCTGCAG
GACTCCATACTCAACCCCATGTCGGCCAACCTTGTGGACCTGGGCTCCTAG

Translation (296 aa):
MSMLPTFGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKIL
ESHQFSPHNHAKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLR
EWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENSENSNSSSHNPLASSLNGSGK
SVLGSSEDEKTPSGTPDHSSSSPALLLSPPPPPGLPSLHSLGHPPGPSAVPVPVPGGGGADPLQHHHSLQ
DSILNPMSANLVDLGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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