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Report for CCDS18028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18028.1 Public Mus musculus 4 Orc3 23 108 98 CCDS HistoryNCBI Gene:50793Re-query CCDS DB by CCDS ID:18028.1Re-query CCDS DB by GeneID:50793See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048706.9 ENSMUSP00000048319.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048706.9Link to Ensembl Protein Viewer:ENSMUSP00000048319.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000048706Re-query CCDS DB by Protein ID:ENSMUSP00000048319
Original member Current member NCBI NM_015824.4 NP_056639.3 Accepted alive Link to Nucleotide Sequence:NM_015824.4Link to Protein Sequence:NP_056639.3Re-query CCDS DB by Nucleotide ID:NM_015824Re-query CCDS DB by Protein ID:NP_056639Link to BLAST:NP_056639.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056639.3 715 Q9JK30-1 715 100% 0 0

Chromosomal Locations for CCDS 18028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 34570913 34571018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34571729 34571808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34572465 34572572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34575032 34575173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34576352 34576449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34577953 34578032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34579743 34579876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34584804 34584883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34585573 34585689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34586444 34586507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34586949 34587082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34593061 34593174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34595077 34595236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34597308 34597441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34598608 34598756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34599704 34599808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34605537 34605681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34607131 34607228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34611022 34611076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34614865 34614909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGCACACGGGGCCGCGGACTATGGCCACCTCCTCCGTGTCTAAGGGCTGCTTTGTGTTTAAACCAGACT
TCAAAAAAAGAAAGGTCTTTGTGCCAATAGAGGATTATTTTAATAATGAGGAACTTGACTCTGAGGACAG
TAAACTTCGATTTGAAACATATAGCTTGCTATGGCAACGGATGAAATCTGAAACAGAGCAATTACAGGAG
GAATTAAATGAAAATCTGTTTGATAACCTAGTTGACTTTCTGCAGAAGTCCCATCCTGAATTCCAGAAAA
ATTCAAGAGACTGGGGCTCTCAAATGAAATTCAGAGAAATTCCAACAGCTGCTCTTATTCTTGGTGTGAA
TGTCACGGATCATGATGTGATACTCAGAAGTCTAACAGAGACCCTTCAGAATAATGTCACACCATATGTA
GTCTCACTGCAAGCTAAGGATTGTCCCGATGTGAAACATTTTTTACAAAAGTTTACCTCACAGTTGATGG
ACTGCTGTGTAGACAGGCATTCCAAGGAGGTGACAAGTGGTAAGGCCCTGAAGAAGACAAATTATTCAAT
GGATTCCCTTTGTAGTTGGTATTCGGCAGTCACACAGAAAGCAGACCACAAAGTGACAATCAAAAAGAGG
ACAGCATCTGGCCATTGGCGGTCCCCTCCTGTGGTGCTTATCTTAAAGAGCATGGAGAGTTTCACCAGCA
AAGTCCTCCAAGACTTCATAACTATCAGCAGTCAGCATCTGCATGAGTTTCCGCTAATTCTGATTTTTGG
GATCGCCACATCTCCTGTTATTATCCACCGACTGCTTCCTCATTCAGTGTCATCGCTGTTGTGTGTAGAA
CTGTTCCAGTCTCTGTCTTGCGAGCAACACCTGACAGTAGTTCTTGATAAGCTACTTCTTACACCTCAGT
TTCCCTTTAAACTAAGTAAAAAGGCATTACAGGTTCTGACCAACATCTTTTTGTATCATGATTTCTCAAT
TCAAAGCTTCATCAAAGGAATTAAGCTTTCTCTACTAGAACATTTTTATTCCCAGCCCCTAAGTGTTCTG
TGCTGCGATCTCTCAGAAGCCAAGAAAAGAGTAAATGTTTTCTCAGTTAGTCAATGTGAAAACATCCGCC
GCCTTCCTTCATTTAGGAGGTACGTGGAAAACCAGCCTTTGGGAAAGCAAGTGGCACTGCTGACAAATGA
GACCTTCTTAAAGGAGAAAACTCAATCATTGCTGGAAGACCTGCATGTTTACCATATCAATTACTTCCTT
GTCTTGAGATGTCTTCATAATTTTACCTCTTCTCTTCCCAAGTACCCACTGGGTCGACAGATTAGGGAGC
TGTATTGCACATGTTTAGAAAAGAAGATATGGGATTCGGAGGAGTACAAGTCAGCCTTGCAGCTGCTGAG
AATGCTGGCAAAGGATGAACTGGTGAGCATACTTCAGCGCTGTATTGAGGTTTTAGATTCCTCTACTGAA
AAGCAGCTTGGCAACACAACACAGAAAATAAAGGATTTCCTGACCCAGTTTCAGAACCTCGATGCAGATA
GCAAAGAGGAAGAGGATGCCTGTGGATCACAGCCAAAGGGGCTGCAGAAGACAGACCTGTATCACCTTCA
GAAGTCCTTACTAGAAATGAAAGAGCTAAGGAGAACTAAGAAGCCAACCAAGTTTGAAATGCTCAGAGAA
AATGTTATGAACTTCATCGACAACTTAGTGAGAGACTACCTTCTGCCTCCTGAGAGCCAGCCTCTGCATG
AGGTAGTGTACTTCAGTGCTGCCAACACACTCCGTGAGCACTTAAATGCTGCTCCAAGAATCGCTCTTCA
CACTGCACTCAACAACCCATACTATTACCTGAAGAATGAAGAACTGGAAGGATGTATTCCAAATACTGCC
CCTGACATCTGCATAGCATACAAACTGCACCTGGAGTGTAGCCTGCTGATCAACCTCGTCGACTGGGCAG
AGGCTTTTGCAACAGTTGTGACAGCTGCTGAGAAAATGGATGCAAATTCTACAGTCTCAGAAGAAATGAG
TGAAGTTATTCATGCTCGATTTATTCGAGCTGTTTCTGAATTAGAACTTTTAGGCTTTATAAAACCTACG
AAACAGAAGACTGACCATGTTGCAAGGCTTACATGGGGAGGCTGTTAA

Translation (715 aa):
MHTGPRTMATSSVSKGCFVFKPDFKKRKVFVPIEDYFNNEELDSEDSKLRFETYSLLWQRMKSETEQLQE
ELNENLFDNLVDFLQKSHPEFQKNSRDWGSQMKFREIPTAALILGVNVTDHDVILRSLTETLQNNVTPYV
VSLQAKDCPDVKHFLQKFTSQLMDCCVDRHSKEVTSGKALKKTNYSMDSLCSWYSAVTQKADHKVTIKKR
TASGHWRSPPVVLILKSMESFTSKVLQDFITISSQHLHEFPLILIFGIATSPVIIHRLLPHSVSSLLCVE
LFQSLSCEQHLTVVLDKLLLTPQFPFKLSKKALQVLTNIFLYHDFSIQSFIKGIKLSLLEHFYSQPLSVL
CCDLSEAKKRVNVFSVSQCENIRRLPSFRRYVENQPLGKQVALLTNETFLKEKTQSLLEDLHVYHINYFL
VLRCLHNFTSSLPKYPLGRQIRELYCTCLEKKIWDSEEYKSALQLLRMLAKDELVSILQRCIEVLDSSTE
KQLGNTTQKIKDFLTQFQNLDADSKEEEDACGSQPKGLQKTDLYHLQKSLLEMKELRRTKKPTKFEMLRE
NVMNFIDNLVRDYLLPPESQPLHEVVYFSAANTLREHLNAAPRIALHTALNNPYYYLKNEELEGCIPNTA
PDICIAYKLHLECSLLINLVDWAEAFATVVTAAEKMDANSTVSEEMSEVIHARFIRAVSELELLGFIKPT
KQKTDHVARLTWGGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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