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Report for CCDS6245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6245.1 Public Homo sapiens 8 DCAF4L2 24 110 108 CCDS HistoryNCBI Gene:138009Re-query CCDS DB by CCDS ID:6245.1Re-query CCDS DB by GeneID:138009See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6245.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319675.5 ENSP00000316496.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319675.5Link to Ensembl Protein Viewer:ENSP00000316496.3Re-query CCDS DB by Nucleotide ID:ENST00000319675Re-query CCDS DB by Protein ID:ENSP00000316496
Original member Current member NCBI NM_152418.4 NP_689631.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152418.4Link to Protein Sequence:NP_689631.1Re-query CCDS DB by Nucleotide ID:NM_152418Re-query CCDS DB by Protein ID:NP_689631Link to BLAST:NP_689631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689631.1 395 Q8NA75 395 100% 0 0

Chromosomal Locations for CCDS 6245.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 87872784 87873971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGAGAGCAAAAGACCGCGACTGCTCGAGGAAGCAGACAAGCAGAAAAAGACAGTCAGAGTGGGACTCA
ATGCACCTTCCATGCTACGAAAGAACCAGCTAGGTTTCCTCAGATTCGCCAACTATTGCCGTATAGCTCG
CGAGCTGCGTGTAAGCTGCATGCAGAGGAAAAAGGTCCAGATTCATAGCTGGGATCCCTCCTCTTTGGCA
AGCGACCGATTTAACCGCATACTGGCGAATACCAACACTGACCAGCTCTTCACAGTGAACCAAGTCGAAG
CTGGAGGCTCCAAGTACGGCATCATCACCATGCGAGGCCTGACGACCCCTGAGCTCCGGGTATACCCGCA
CAAAACCCTCTACGTCCCTAATCGGAAGGTGAATTCTATGTGCTGGGCCTCACTGAATCACTTGGATTCC
CACCTTCTGCTGTGCTTCGTGGGACTTGCAGATACTCCAAGCTGTGCCGTGCTGCTCCCAGCGTCGCTGT
TCATAGGTAGCTTCCCAGGAATGCGTCGGCCTGGCATGCTTTGCAGTTTCCAGATCCCTGATGCCTGGTC
CTGTGCCTGGTCCCTGAGCATCCACGCGTATCACTCTTTCAGTACAGGCTTGTCTCAGCAGGTCCTGTTG
ACCAACGTGGTGACGGGACACCAGCAGTCATTTGGGACTAGCAGTGATGTCTTGGCCCAGCAGTTTGCAA
TCATGACTCCTTTGCTGTTTAATGGCTGTCGCTCTGGGGAGATCTTTGGCATTGATCTGCGCTGTGGAAA
TCAAGGCAGCGGGTGGAAGGCCATTTGCCTGTCCCATGATTCAGCAGTGACTTCTCTGCAAATCCTCCAA
GATGGCCAATTCCTGGTGTCATCAGACATGACTGGAACTATCAAGCTGTGGGACTTGAGGGCCACTAAAT
GTGTAACACAGTACGAAGGTCATGTGAATAACTCCGCCTACCTACCCGTGCATGTGAACGAAGAAGAAGG
AGTCGTGGCGGCCGTGGGCCAGGACTGCTACACGAGAATCTGGAGCCTCCGTCATGGCCACCTGCTCACA
ACCATACCCTCCCCATACCCCGCCTCGGAGAACGACATTCCCAGTGTGGCCTTCTCTTCTCGCCTCGGGG
GCTTCCGAGGAGCACCAGGGCTGCTCATGGCTGTCCGGGAGGACCTTTATTGTTTCTCCTACGGTTAA

Translation (395 aa):
MESKRPRLLEEADKQKKTVRVGLNAPSMLRKNQLGFLRFANYCRIARELRVSCMQRKKVQIHSWDPSSLA
SDRFNRILANTNTDQLFTVNQVEAGGSKYGIITMRGLTTPELRVYPHKTLYVPNRKVNSMCWASLNHLDS
HLLLCFVGLADTPSCAVLLPASLFIGSFPGMRRPGMLCSFQIPDAWSCAWSLSIHAYHSFSTGLSQQVLL
TNVVTGHQQSFGTSSDVLAQQFAIMTPLLFNGCRSGEIFGIDLRCGNQGSGWKAICLSHDSAVTSLQILQ
DGQFLVSSDMTGTIKLWDLRATKCVTQYEGHVNNSAYLPVHVNEEEGVVAAVGQDCYTRIWSLRHGHLLT
TIPSPYPASENDIPSVAFSSRLGGFRGAPGLLMAVREDLYCFSYG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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