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Report for CCDS15600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15600.1 Public Mus musculus 1 Lyplal1 23 108 98 CCDS HistoryNCBI Gene:226791Re-query CCDS DB by CCDS ID:15600.1Re-query CCDS DB by GeneID:226791See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045388.7 ENSMUSP00000048229.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045388.7Link to Ensembl Protein Viewer:ENSMUSP00000048229.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045388Re-query CCDS DB by Protein ID:ENSMUSP00000048229
Original member Current member NCBI NM_146106.2 NP_666218.2 Accepted alive Link to Nucleotide Sequence:NM_146106.2Link to Protein Sequence:NP_666218.2Re-query CCDS DB by Nucleotide ID:NM_146106Re-query CCDS DB by Protein ID:NP_666218Link to BLAST:NP_666218.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666218.2 239 Q3UFF7 239 99.5816% 0 1

Chromosomal Locations for CCDS 15600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 186088529 186088768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186089444 186089559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186100193 186100362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186114264 186114363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186117157 186117250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGCTGCTGTGCCCAGCGCTGTTCACCTGCCGCGTTGTGTGGTGTCCCCGACCGGGAGACACAGTGCCT
CGCTGATCTTCCTGCACGGCTCAGGTCACTCTGGCCAAGGACAGAGAGAGTGGATCAAGCACGTGCTAAA
CCAAGACTTAACATTCCAGCACATAAAGATCATTTATCCAACGGCCCCCTCCAGGCCGTATACTCCTCTG
AAGGGAGGGCTCTCCAATGTGTGGTTTGACAGATTTAAAATATCTATGGACTGCCCAGAACACCTTGAAT
CAATTGATAGTATGTGTCAAGTGCTCAGTGGATTGGTTGATGAAGAAGTAAAAACTGGCATTCAGAAGAG
CAGGATATTAATAGGGGGATTTTCTATGGGAGGCTGCATGGCGATGCATTTAGCATACAGAAGTCACCCA
GATGTGGCAGGAGTATTTGTTCTTTCTGGTTTTCTGAATAAAGCATCTGTTGTTTACCAGGACCTTCAGC
AAGGTGGCCGCATGCTCCCTGAGCTCTTCCAGTGTCACGGCTCTGCAGATAACCTAGTTCTGCATGCTTG
GGGCAAGGAGACAAACTCAAAACTGAAATCTCTAGGAGTGAGCACAACGTTTCACAGTCTTCCGAATCTT
AACCATGAGCTCAACAAAACTGAGCTGGAGAAGCTAAAGTCATGGATTCTCACAAGGCTGCCAGGAGAGA
CAGATGGGCAGAGTGAATGA

Translation (239 aa):
MAAVPSAVHLPRCVVSPTGRHSASLIFLHGSGHSGQGQREWIKHVLNQDLTFQHIKIIYPTAPSRPYTPL
KGGLSNVWFDRFKISMDCPEHLESIDSMCQVLSGLVDEEVKTGIQKSRILIGGFSMGGCMAMHLAYRSHP
DVAGVFVLSGFLNKASVVYQDLQQGGRMLPELFQCHGSADNLVLHAWGKETNSKLKSLGVSTTFHSLPNL
NHELNKTELEKLKSWILTRLPGETDGQSE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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