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Report for CCDS23570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23570.1 Public Mus musculus 9 Ccdc12 23 108 98 CCDS HistoryNCBI Gene:72654Re-query CCDS DB by CCDS ID:23570.1Re-query CCDS DB by GeneID:72654See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019803.8 ENSMUSP00000019803.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019803.8Link to Ensembl Protein Viewer:ENSMUSP00000019803.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019803Re-query CCDS DB by Protein ID:ENSMUSP00000019803
Original member Current member NCBI NM_028312.3 NP_082588.2 Accepted alive Link to Nucleotide Sequence:NM_028312.3Link to Protein Sequence:NP_082588.2Re-query CCDS DB by Nucleotide ID:NM_028312Re-query CCDS DB by Protein ID:NP_082588Link to BLAST:NP_082588.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082588.2 166 Q8R344 166 100% 0 0

Chromosomal Locations for CCDS 23570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110656563 110656658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110692316 110692383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110708446 110708525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110709894 110709955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110710127 110710161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110711086 110711162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110711251 110711333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGGCGGCTGCTCCTGCCGGTGTGGGCCGCCTAGAGGAAGAGGCGCTGCGGCGGAAAGAACGGCTGAAGG
CCCTCCGGGAGAAAACCGGGCGCAAGGACAGGGAAGATGGGGAGCCACAGACCAAGCAGCTCAGAGAAGA
GGGAGAGGAAGTTGGGAAGCACAGGGGACTCAGGCTCCGGAACTATGTCCCAGAGGATGAAGACCTGAAG
AGGAGGCGGGTCCCCCAGGCCAAACCAGTGGCAGTGGAGGAGAAGGTGAAGGAGCAGCTGGAGGCAGCCA
AGCCAGAGCCTGTCATTGAGGAAGTGGACCTGGCCAACCTGGCACCCCGGAAACCTGATTGGGATCTCAA
GAGAGATGTGGCCAAGAAGCTAGAGAAGCTAGAAAAGCGGACCCAGAGAGCCATCGCGGAGCTGATCCGT
GAGCGGCTAAAAGGCCAGGAGGACAGCCTGGCCTCTGCAGTGGATGCCACCACCGGACAAGAGGCTTGTG
ACTCTGACTGA

Translation (166 aa):
MAAAPAGVGRLEEEALRRKERLKALREKTGRKDREDGEPQTKQLREEGEEVGKHRGLRLRNYVPEDEDLK
RRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKLEKRTQRAIAELIR
ERLKGQEDSLASAVDATTGQEACDSD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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