NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15877.1 Public Mus musculus 2 Dolk 23 108 98 CCDS HistoryNCBI Gene:227697Re-query CCDS DB by CCDS ID:15877.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100219.4 ENSMUSP00000097792.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100219.4Link to Ensembl Protein Viewer:ENSMUSP00000097792.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100219Re-query CCDS DB by Protein ID:ENSMUSP00000097792
Original member Current member NCBI NM_177648.3 NP_808316.1 Accepted alive Link to Nucleotide Sequence:NM_177648.3Link to Protein Sequence:NP_808316.1Re-query CCDS DB by Nucleotide ID:NM_177648Re-query CCDS DB by Protein ID:NP_808316Link to BLAST:NP_808316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808316.1 534 Q8R2Y3 534 100% 0 0

Chromosomal Locations for CCDS 15877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30284427 30286031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGACCCGACAGTGCCCTCCCCAGGAGTCTGGGGCTGCGCTGAGCGGGTCGGTGCTGGCGGAGGCTGCAG
TGGTGTTCGCCGTGGTGTTGAGCATCCACGCTGCAGTGTGGGACCGATACTCCTGGTGCGCGGTGGCCCT
CGCGGTGCAGGCCTTCTACGTCCAGTACAAGTGGGACCGGCTGCTCCAGCAGGGCAATGCCGTTTTCCAG
TTCCGGATGTCCGCGAACAGCGGCTTACTGCCGGCCTCCATGGTCATGCCTTTGCTTGGGCTAGTCATGA
AGGAGCGCTGCCAGACTGCAGGGAACCCATACTTCGAGCGCTTCGGCATTGTGGTTGCAGCTACTGGCAT
GGCAGTGGCCCTCTTCTCCTCCGTGTTGGCACTGGGCATTACTCGCCCGGTGCCCACCAATACTTGTGCC
ATCTCTGGTTTGGCTGGAGGCGTTATCATTTATATTATGAGGCACTCGCTCAGTGTAGGCGAGGTGATCG
AGGTCCTGGAAGTCCTGCTAATATTTGTTTATCTCAACATGATCCTGCTGTACCTGCTGCCCCGATGCTT
CACTCCTGGGGAGGCACTGCTGGTATTGGGTGGCATTAGCTTCGTCCTTAACCAACTCATCAAGCGCTCT
CTGACTGAAAGCCAGGGGGACCCAGTGGACTTCTTCCTGTTGGTGGTGGTGGTAGGGATGGTGCTCATGG
GTGTCTTTTTCAGCACCCTCTTTGTCTTCATGGATTCAGGCACCTGGGCCTCTTCCATCTTCTTCCACCT
CATGACCTGTGTGCTGGGCCTTGGTGTGGTTCTGCCCTGGCTGCACTGGCTCATTCGTAGGAACCCCCTG
CTTTGGCTTCTTCAGTTCCTCTTCTACACTGAAACTCGCATCTACCTCCTTGCCTATTGGTCTTTGCTGG
CCTCTGTGGCCTGCCTGGTGGTGCTGTACCAGAATGCTAAGCGGTCGTCTTCTGAGTCCAAGAAGCACAG
GGCGCCTACCATTACAAGAAAGTATTTCCACTTCATTGTGGTAGCCACTTATATCCCGGGCATCATCTTT
GACCGGCCACTGCTGTATGTGGCCGCCACTGTGTGCCTGGCAGTCTTCATCTTCCTGGAGTATGTGCGCT
ATTTCCGAATAAAGCCCTTGGGTCACACTCTGCGAAGCCTTCTGTCCCTCTTCCTGGATGAACGAGACAG
TGGACCCCTTATCCTAACACACATCTACCTGCTTCTGGGCATGTCTCTTCCTATTTGGCTGATCCCCAGA
CCCTGTACACAGAAGGACAGCCTGGAAGGAGCAAGAGCCCTGGTCCCCTATGCTGGGGTCTTGGCTGTGG
GTGTGGGTGATACTGTGGCCTCCATATTTGGCAGCACCATGGGAGAGATCCGCTGGCCTGGAACTAAGAA
AACCTTCGAGGGGACTATGACATCTATATTTGCACAAATCATCTCTGTAGCTCTAATCTTAATCTTTGAC
AGTGGAGTAGACCTGAACTACAGTTATGCCTGGATTTTGGGGTCCATCAGCACTGTATCCCTTCTGGAAG
CGTACACTACTCAGATAGACAATCTCCTGTTGCCTCTCTACCTACTGATATTGCTGATGGCCTAG

Translation (534 aa):
MTRQCPPQESGAALSGSVLAEAAVVFAVVLSIHAAVWDRYSWCAVALAVQAFYVQYKWDRLLQQGNAVFQ
FRMSANSGLLPASMVMPLLGLVMKERCQTAGNPYFERFGIVVAATGMAVALFSSVLALGITRPVPTNTCA
ISGLAGGVIIYIMRHSLSVGEVIEVLEVLLIFVYLNMILLYLLPRCFTPGEALLVLGGISFVLNQLIKRS
LTESQGDPVDFFLLVVVVGMVLMGVFFSTLFVFMDSGTWASSIFFHLMTCVLGLGVVLPWLHWLIRRNPL
LWLLQFLFYTETRIYLLAYWSLLASVACLVVLYQNAKRSSSESKKHRAPTITRKYFHFIVVATYIPGIIF
DRPLLYVAATVCLAVFIFLEYVRYFRIKPLGHTLRSLLSLFLDERDSGPLILTHIYLLLGMSLPIWLIPR
PCTQKDSLEGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSIFAQIISVALILIFD
SGVDLNYSYAWILGSISTVSLLEAYTTQIDNLLLPLYLLILLMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH