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Report for CCDS28487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28487.1 Public Mus musculus 17 Nthl1 23 108 98 CCDS HistoryNCBI Gene:18207Re-query CCDS DB by CCDS ID:28487.1Re-query CCDS DB by GeneID:18207See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047611.3 ENSMUSP00000047413.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047611.3Link to Ensembl Protein Viewer:ENSMUSP00000047413.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000047611Re-query CCDS DB by Protein ID:ENSMUSP00000047413
Original member Current member NCBI NM_008743.2 NP_032769.2 Accepted alive Link to Nucleotide Sequence:NM_008743.2Link to Protein Sequence:NP_032769.2Re-query CCDS DB by Nucleotide ID:NM_008743Re-query CCDS DB by Protein ID:NP_032769Link to BLAST:NP_032769.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032769.2 300 O35980 300 100% 0 0

Chromosomal Locations for CCDS 28487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24632752 24632854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24633927 24634165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24634725 24634895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24635588 24635747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24638424 24638529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24638608 24638731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGAACTCAGGGGTGCGGATGGTGACTCGCAGTCGGAGCCGCGCGACTAGGATCGCGTCGGAAGGGTGTA
GGGAGGAGCTCGCCCCGCGAGAGGCTGCTGCAGAAGGAAGAAAAAGCCACAGGCCCGTGAGACATCCACG
GAGAACACAGAAAACGCATGTGGCCTATGAAGCGGCTAATGGTGAGGAAGGCGAAGATGCTGAGCCCCTC
AAAGTGCCCGTTTGGGAGCCCCAGAACTGGCAGCAGCAACTGGCCAACATCCGCATCATGAGAAGCAAGA
AGGATGCACCTGTGGACCAGCTAGGCGCCGAGCACTGCTATGATGCAAGTGCCTCCCCGAAGGTGAGGAG
GTACCAGGTACTCCTGTCGCTGATGCTCTCCAGCCAGACCAAAGACCAGGTCACAGCAGGTGCTATGCAA
CGGCTCCGGGCCCGGGGCTTGACTGTGGAGAGCATCCTGCAGACCGATGATGACACGCTAGGCAGACTCA
TCTACCCTGTGGGCTTCTGGAGGAACAAGGTAAAATACATCAAGCAGACAACCGCCATCCTGCAGCAGCG
CTACGAAGGGGACATCCCTGCTTCCGTGGCTGAGCTGGTAGCCTTGCCAGGTGTTGGGCCCAAGATGGCA
CACTTGGCTATGGCTGTGGCCTGGGGGACCATATCAGGCATAGCAGTGGACACACATGTGCACAGAATAG
CCAACCGACTGAGGTGGACCAAGAAGATGACCAAGACCCCAGAAGAGACACGTAAGAACTTGGAAGAGTG
GCTACCCAGGGTGCTGTGGAGTGAGGTCAACGGACTACTGGTAGGCTTCGGCCAACAGATCTGTCTTCCT
GTCCATCCTCGATGTCAGGCTTGCCTCAACAAGGCCCTGTGCCCTGCTGCCCAGGATCTCTAA

Translation (300 aa):
MNSGVRMVTRSRSRATRIASEGCREELAPREAAAEGRKSHRPVRHPRRTQKTHVAYEAANGEEGEDAEPL
KVPVWEPQNWQQQLANIRIMRSKKDAPVDQLGAEHCYDASASPKVRRYQVLLSLMLSSQTKDQVTAGAMQ
RLRARGLTVESILQTDDDTLGRLIYPVGFWRNKVKYIKQTTAILQQRYEGDIPASVAELVALPGVGPKMA
HLAMAVAWGTISGIAVDTHVHRIANRLRWTKKMTKTPEETRKNLEEWLPRVLWSEVNGLLVGFGQQICLP
VHPRCQACLNKALCPAAQDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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