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Report for CCDS49232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49232.1 Public Mus musculus 13 Fam50b 23 108 98 CCDS HistoryNCBI Gene:108161Re-query CCDS DB by CCDS ID:49232.1Re-query CCDS DB by GeneID:108161See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039605.7 ENSMUSP00000046980.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039605.7Link to Ensembl Protein Viewer:ENSMUSP00000046980.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039605Re-query CCDS DB by Protein ID:ENSMUSP00000046980
Original member Current member EBI ENSMUST00000221037.1 ENSMUSP00000152187.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221037.1Link to Ensembl Protein Viewer:ENSMUSP00000152187.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221037Re-query CCDS DB by Protein ID:ENSMUSP00000152187
Original member Current member NCBI NM_138746.2 NP_620085.2 Accepted alive Link to Nucleotide Sequence:NM_138746.2Link to Protein Sequence:NP_620085.2Re-query CCDS DB by Nucleotide ID:NM_138746Re-query CCDS DB by Protein ID:NP_620085Link to BLAST:NP_620085.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620085.2 334 Q9WTJ8 334 100% 0 0

Chromosomal Locations for CCDS 49232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 34746543 34747547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGCGCAGTACAAAGGCACCATGCGGGAAGCTGGCCGGGCCATGCACCTGATCAAGAAGCGTGAGAAGC
AGAAGGAGCAGATGGAGGTGCTGAAGCAGCGCATCGCAGAGGAGACCATCATGAAGTCAAAAGTGGACAA
GAAGTTCTCGGCACACTACGACGCCGTGGAGGCCGAGCTGAAGTCCAGTACGGTGGGCCTGGTGACCCTG
AATGACATGAAGGCCAAGCAGGAGGCCCTGCTGAGGGAGCGGGAGATGCAGCTGGCCAAGAGGGAGCAGC
TGGAGCAACGCCGGATACAGCTGGAGATGCTGCGCGAGAAGGAGCGAAGGCGAGAGCGCAAGCGCAAGAT
CTCCAACCTGTCTTTCACGTTGGACGAGGAAGAAGGTGACCAAGAGGACAGCCGCCAAGCCGAGAGTGCC
GAGGCCCACAGTGCTGGAGCCAAGAAGAACTTGGGCAAGAATCCCGATGTGGACACGAGCTTCCTGCCCG
ACCGCGAGCGCGAGGAGGAGGAGAACCGGTTGCGCGAGGAACTGCGGCAGGAGTGGGAGGCGAAGCGCGA
GAAGGTGAAGGGCGAGGAGGTGGAGATCACCTTCAGCTACTGGGATGGCTCCGGCCACCGGCGCACGGTG
CGCATGAGCAAGGGCAGCACGGTGCAGCAGTTCCTGAAGCGGGCGCTGCAGGGGCTGCGCAGGGACTTCC
GGGAGCTGCGGGCAGCGGGCGTGGAGCAGCTCATGTACGTCAAGGAGGATCTCATCCTGCCGCACTATCA
CACCTTCTACGACTTCATCGTGGCCAAAGCCCGGGGCAAGAGCGGCCCGCTCTTCAGCTTCGACGTGCAC
GACGATGTGCGGCTGCTGAGCGATGCCACGATGGAGAAAGATGAGTCACACGCGGGCAAGGTGGTGCTTC
GCAGCTGGTACGAGAAGAACAAGCACATCTTCCCTGCCAGCCGCTGGGAGCCCTACGACCCCGAGAAGAA
GTGGGACAGGTACACCATCCGGTGA

Translation (334 aa):
MAQYKGTMREAGRAMHLIKKREKQKEQMEVLKQRIAEETIMKSKVDKKFSAHYDAVEAELKSSTVGLVTL
NDMKAKQEALLREREMQLAKREQLEQRRIQLEMLREKERRRERKRKISNLSFTLDEEEGDQEDSRQAESA
EAHSAGAKKNLGKNPDVDTSFLPDREREEEENRLREELRQEWEAKREKVKGEEVEITFSYWDGSGHRRTV
RMSKGSTVQQFLKRALQGLRRDFRELRAAGVEQLMYVKEDLILPHYHTFYDFIVAKARGKSGPLFSFDVH
DDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDRYTIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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