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Report for CCDS16275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16275.1 Public Mus musculus 2 Or5t17 23 108 98 CCDS HistoryNCBI Gene:228228Re-query CCDS DB by CCDS ID:16275.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055129.5 ENSMUSP00000052861.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055129.5Link to Ensembl Protein Viewer:ENSMUSP00000052861.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055129Re-query CCDS DB by Protein ID:ENSMUSP00000052861
Original member Current member EBI ENSMUST00000214002.1 ENSMUSP00000149634.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214002.1Link to Ensembl Protein Viewer:ENSMUSP00000149634.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214002Re-query CCDS DB by Protein ID:ENSMUSP00000149634
Original member Current member NCBI NM_207154.2 NP_997037.2 Accepted alive Link to Nucleotide Sequence:NM_207154.2Link to Protein Sequence:NP_997037.2Re-query CCDS DB by Nucleotide ID:NM_207154Re-query CCDS DB by Protein ID:NP_997037Link to BLAST:NP_997037.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997037.2 324 Q8VES2 324 100% 0 0

Chromosomal Locations for CCDS 16275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87001971 87002945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGCCAAGGACTCCGTCATATACGAATACAAAAACTACACAGGTGAACAATGTGACTGAAATCACTGTCT
TTATACTACTGGGATTCACAGATGATGTTGACATGAACATATTTTTATTTATCTTGTTTCTTGCAATATA
TGTTGTAACTCTGATTGGAAATCTAGGTTTGGTTGTATTGGTCATCGAGGATTCACGGCTCCACAACCCC
ATGTACTATTTTCTGACTGTTTTGTCATCCTTGGATGCCTGCTTTTCTTCAGTACTAACTCCCAAAATGT
TGGTCAATTTCCTTTCAAAAAACAAATCCATTTCATTTGCTGGATGTGCAACACAGATGCTTCTCTTTGT
AACATTTGGAACCACAGAATGCTTCCTTTTAGCAGCAATGGCTTATGACCGTTATTTGGCAATCTACAGC
CCACTTCTGTATGCAGTAAGAATGTCTCCAAGGGTCTATGTACCACTCATTATTGCTTCCTATACTGGTG
GAATTTTACATGCTACGATACACACAGTGGCTACTTTTAGCCTTTCTTTCTGTGGATCCAATGAAATTAG
ACATGTCTTTTGTGATATTCCTCCATTGCTTGCACTTTCTTGTTCTGACACCCACTTAAATCAACTTCTG
CTCTTCTACTGTGCAGGCTCCATTGAACTAATCACCATCCTCATTGTCCTGGTCTCTTATGGATTTGTCC
TGTTGGCCATTCTGAAGATTAATTCAGCTGAAGGAAGGAGAAAAATATTTTCTACATGTGGAGCTCACCT
AACAGGTGTGTCTATTTTTCATGGGACAATCCTTTTCATGTATGTGAGACCAAGTTCCAACTACACACTT
GAACAAGACATGGTAGTGTCAACATTTTATACCATTGTGATTCCCATGCTGAATCCCATCATCTACAGTT
TGAGAAACAAAGATGTAAAAGAGGCAATGAGAAAGTTACTCAAGAGAAAATTGGTTCATGAATGA

Translation (324 aa):
MPRTPSYTNTKTTQVNNVTEITVFILLGFTDDVDMNIFLFILFLAIYVVTLIGNLGLVVLVIEDSRLHNP
MYYFLTVLSSLDACFSSVLTPKMLVNFLSKNKSISFAGCATQMLLFVTFGTTECFLLAAMAYDRYLAIYS
PLLYAVRMSPRVYVPLIIASYTGGILHATIHTVATFSLSFCGSNEIRHVFCDIPPLLALSCSDTHLNQLL
LFYCAGSIELITILIVLVSYGFVLLAILKINSAEGRRKIFSTCGAHLTGVSIFHGTILFMYVRPSSNYTL
EQDMVVSTFYTIVIPMLNPIIYSLRNKDVKEAMRKLLKRKLVHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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