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Report for CCDS16490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16490.1 Public Mus musculus 2 Cstf3 23 108 98 CCDS HistoryNCBI Gene:228410Re-query CCDS DB by CCDS ID:16490.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028599.7 ENSMUSP00000028599.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028599.7Link to Ensembl Protein Viewer:ENSMUSP00000028599.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028599Re-query CCDS DB by Protein ID:ENSMUSP00000028599
Original member Current member NCBI NM_145529.3 NP_663504.1 Accepted alive Link to Nucleotide Sequence:NM_145529.3Link to Protein Sequence:NP_663504.1Re-query CCDS DB by Nucleotide ID:NM_145529Re-query CCDS DB by Protein ID:NP_663504Link to BLAST:NP_663504.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663504.1 717 Q99LI7 717 100% 0 0

Chromosomal Locations for CCDS 16490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 104590676 104590702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104608871 104608972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104609091 104609186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104644289 104644321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104644979 104645076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104646400 104646466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104646609 104646643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104646724 104646850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104648170 104648247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104649453 104649615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104651642 104651751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104652445 104652561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104653004 104653078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104654161 104654304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104655689 104655791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104659266 104659335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104660519 104660714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104663294 104663447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104664069 104664163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104664297 104664357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104664717 104664919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGTCAGGAGACGCAGCCGCGGAGCAGGCAGCGGAATATGTCCCAGAGAAGGTGAAGAAAGCGGAAAAGA
AATTAGAAGAAAATCCATATGACCTTGATGCTTGGAGCATTCTCATTCGAGAGGCACAGAATCAACCTAT
AGACAAAGCACGGAAGACTTACGAACGCCTTGTTGCCCAGTTCCCCAGTTCTGGCAGATTCTGGAAACTG
TACATTGAAGCAGAGATTAAAGCTAAAAATTATGACAAGGTTGAAAAGCTATTTCAAAGATGCCTTATGA
AGGTTTTGCACATTGATTTATGGAAGTGTTATCTTTCATACGTCAGAGAAACCAAGGGTAAACTGCCCAG
CTACAAAGAAAAAATGGCTCAAGCTTATGACTTTGCACTAGATAAAATTGGAATGGAAATTATGTCCTAT
CAGATTTGGGTGGATTACATCAATTTCTTAAAAGGAGTGGAAGCTGTAGGATCTTATGCAGAAAATCAGA
GAATAACTGCTGTCCGAAGAGTTTATCAACGAGGTTGTGTTAATCCAATGATCAACATTGAACAACTCTG
GAGAGACTACAACAAGTATGAAGAGGGTATCAATATTCATTTAGCTAAAAAGATGATTGAAGATCGGAGT
AGAGACTACATGAATGCTAGACGTGTAGCAAAGGAATACGAGACAGTCATGAAAGGTTTGGACCGCAATG
CTCCTTCAGTGCCTCCTCAGAATACTCCTCAAGAAGCTCAGCAAGTGGACATGTGGAAGAAGTACATCCA
GTGGGAGAAGAGCAACCCTCTTCGCACAGAGGACCAGACCCTGATAACCAAAAGAGTTATGTTTGCCTAT
GAACAGTGCCTCCTTGTGCTGGGCCATCACCCTGATATCTGGTATGAAGCTGCCCAGTATCTGGAACAGT
CGAGTAAGCTGCTTGCAGAAAAGGGGGACATGAACAATGCCAAGTTATTTAGTGACGAAGCTGCTAATAT
TTATGAAAGAGCCATAAGCACGTTATTAAAGAAGAACATGCTCCTTTATTTTGCATATGCAGATTATGAA
GAGAGTCGCATGAAGTATGAGAAGGTTCACAGTATATATAACAGACTTCTGGCAATTGAGGACATTGACC
CCACCTTAGTATATATTCAGTATATGAAATTTGCAAGGAGAGCAGAAGGTATCAAATCTGGAAGAATGAT
ATTTAAAAAAGCAAGAGAGGATGCCAGGACCCGCCATCATGTCTATGTAACTGCAGCCCTCATGGAATAT
TACTGTAGCAAGGACAAATCTGTTGCCTTTAAGATTTTTGAATTGGGACTAAAGAAATATGGAGACATTC
CAGAATATGTTTTGGCTTATATTGACTATCTCTCTCACCTCAATGAGGACAATAATACTCGAGTTTTGTT
TGAAAGAGTTCTAACGTCTGGAAGCCTTCCTCCTGAGAAGTCTGGAGAAATCTGGGCTCGATTTCTAGCT
TTTGAAAGTAATATTGGTGATTTAGCTAGTATACTCAAAGTGGAAAAAAGACGGTTTACAGCATTCAGAG
AAGAGTATGAAGGCAAGGAAACAGCTTTACTGGTGGACAGATACAAGTTTATGGATTTATACCCTTGTTC
TGCAAGTGAACTCAAAGCACTGGGCTATAAGGATGTCTCCCGTGCTAAGCTAGCTGCTATAATTCCAGAC
CCAGTTGTAGCTCCTTCCATAGTGCCTGTTCTGAAAGATGAAGTGGATAGAAAACCTGAGTACCCTAAGC
CAGACACTCAGCAGATGATTCCATTTCAGCCACGACATTTAGCACCTCCAGGCTTGCACCCTGTCCCCGG
TGGAGTGTTTCCAGTGCCTCCTGCCGCTGTTGTTTTGATGAAACTGCTCCCACCTCCTATCTGCTTCCAG
GGTCCTTTTGTACAAGTGGATGAGCTGATGGAAATTTTCCGAAGATGCAAGATACCAAACACTGTTGAGG
AAGCCGTGAGGATCATCACTGGTGGGGCCCCAGAGCTGGCTGTGGAAGGCAACGGCCCAGTGGAAAGTAG
TGCTGTACTGACTAAGGCTGTCAAAAGGCCCAACGAGGATTCAGACGAAGATGAAGAAAAGGGGGCTGTA
GTCCCCCCTGTTCATGACATTTACAGAGCACGGCAGCAGAAGCGAATACGATGA

Translation (717 aa):
MSGDAAAEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKL
YIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY
QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRS
RDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY
EQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE
ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA
FESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSASELKALGYKDVSRAKLAAIIPD
PVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAVVLMKLLPPPICFQ
GPFVQVDELMEIFRRCKIPNTVEEAVRIITGGAPELAVEGNGPVESSAVLTKAVKRPNEDSDEDEEKGAV
VPPVHDIYRARQQKRIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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