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Report for CCDS16728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16728.1 Public Mus musculus 2 F830045P16Rik 23 108 98 CCDS HistoryNCBI Gene:228592Re-query CCDS DB by CCDS ID:16728.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050309.5 ENSMUSP00000058047.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050309.5Link to Ensembl Protein Viewer:ENSMUSP00000058047.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050309Re-query CCDS DB by Protein ID:ENSMUSP00000058047
Original member Current member NCBI NM_177653.3 NP_808321.1 Accepted alive Link to Nucleotide Sequence:NM_177653.3Link to Protein Sequence:NP_808321.1Re-query CCDS DB by Nucleotide ID:NM_177653Re-query CCDS DB by Protein ID:NP_808321Link to BLAST:NP_808321.1

Chromosomal Locations for CCDS 16728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 129459293 129459399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129460314 129460640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129463423 129463731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129472635 129472949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129474382 129474693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129536369 129536462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGCAGAAGACCTTGGCACCAGCTGCTCTGCCTTATGTCACAGACAGGGAAACTGAGGCCCAGAAAAGGA
GATGGATTTTTCTACTCTTGTTTGTTGGGAAGCCTTTCATCACCCTGATAGGCCCAGATCAGAGGACAAC
CCCTTCCAGTTCAGTGTTTTTTCTCTGTACTGCTGCCCCTTTCAGGTCCATGAACCTCAGTGTCAACTGG
TTGAGGAACAACAATGAACATCCAGCCTCAACCACACACGTGGTACATGTCAACAATGACTCTTACTCTC
TCAGAAGCAAAGCATGGGTGACCCTGACCAAGCAAGATATCTCGTCTCAGATCACCTGTGAAGTCACCCA
TGGAGACCTCAAAGAGCCCCTAAGAATGACCATTAATCTTTCTCAAGTTCTCCGAGTTATCCCAACACTG
AAGATCACCACTGAAGACCCAGAGATCCAAGATCATGTGCATCAAAAAGTGAACCTGACTTGCCATGTAA
ACCACTTCTATCCCCAAAACATGGACCTCATCTGGACTAAGAATGGGCACAAGATCCCGACCATGGAACT
TCCTCAGACCACCAGAAACTCTGATGGGACTTACTCTCTACAGCACACATTACAGGTAGATGCCATATTG
AATAAGACTGACTTTGTCTGCTGGGTGATCCAGGATGACCAGCCTCCAGTTAAGAACAGCATCACCCTGG
GAGCTCCCAGGAAGATCAGAGGAAGGACAGAGTATTCTCATCACCTTGAAGGCCCCCTGCAGCGGTTTCC
ACCTGGAGCAAGCATCCAATTGAAGTACACATCCTCTGCATTACAAACTCGTCAGGTTACTGTGACCTGG
CTCAAAAACAACCACACCCGTCTCCAGACCCAGACCAACGTCTTCTCCAATGGAGAGACCTACAATGTTA
CTAGCACTGCGATCGTCTCACTGGAGAGTGATGACATATTATCGTTAGTTCTCTGCCTGGTTGAGCACAA
GTCATTAGTGGTTTTCCAGAAAGTCATCTACTTGGGCCAGTACCTCTGTGTTCCCCCGGCAGTGAGAGTG
TCCCAATCTTCAACTGTCTCCAGTTTGGTGACTGTCACTTGCCATGTGCAGAGATTCTATCCCCAGGAGG
TATATCTCTCCTGGCTGGAAGACTGCCATGTGATCAGGAGAATAGAGCAACCTACACCTAAGAGGAATGA
GGATGGGTCCTACACTCTGGAAGTCCTGCAGTTGGTAAACACATCAGTGGAGAGGTCTGATCAAGTACTC
ACTTGCAAGGTGGAACATGAGGAACACCCTCCCATCCAGGCCAGCATTGTATTGTCTGCAGCATCCTTTC
CCACATCCAAAGCCATCAGGAGCCTAAGTTCAGAGAAATCTATCCACGTTTTTGTGGCCTCCCTTCTGTG
CCTCAAGTTACTTCTGGTGGTGAGTTTACTAGTCATCTACGTGTATAGGCGGTGGAGCCTGTGA

Translation (487 aa):
MQKTLAPAALPYVTDRETEAQKRRWIFLLLFVGKPFITLIGPDQRTTPSSSVFFLCTAAPFRSMNLSVNW
LRNNNEHPASTTHVVHVNNDSYSLRSKAWVTLTKQDISSQITCEVTHGDLKEPLRMTINLSQVLRVIPTL
KITTEDPEIQDHVHQKVNLTCHVNHFYPQNMDLIWTKNGHKIPTMELPQTTRNSDGTYSLQHTLQVDAIL
NKTDFVCWVIQDDQPPVKNSITLGAPRKIRGRTEYSHHLEGPLQRFPPGASIQLKYTSSALQTRQVTVTW
LKNNHTRLQTQTNVFSNGETYNVTSTAIVSLESDDILSLVLCLVEHKSLVVFQKVIYLGQYLCVPPAVRV
SQSSTVSSLVTVTCHVQRFYPQEVYLSWLEDCHVIRRIEQPTPKRNEDGSYTLEVLQLVNTSVERSDQVL
TCKVEHEEHPPIQASIVLSAASFPTSKAIRSLSSEKSIHVFVASLLCLKLLLVVSLLVIYVYRRWSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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