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Report for CCDS30885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30885.1 Public Homo sapiens 1 KHDC4 24 110 108 CCDS HistoryNCBI Gene:22889Re-query CCDS DB by CCDS ID:30885.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30885.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368321.8 ENSP00000357304.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368321.8Link to Ensembl Protein Viewer:ENSP00000357304.3Re-query CCDS DB by Nucleotide ID:ENST00000368321Re-query CCDS DB by Protein ID:ENSP00000357304
Original member Current member NCBI NM_014949.4 NP_055764.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014949.4Link to Protein Sequence:NP_055764.2Re-query CCDS DB by Nucleotide ID:NM_014949Re-query CCDS DB by Protein ID:NP_055764Link to BLAST:NP_055764.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055764.2 614 Q7Z7F0-1 614 100% 0 0

Chromosomal Locations for CCDS 30885.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155914121 155914320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155915873 155915964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155916625 155916737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155917499 155917672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155921375 155921628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155921861 155921918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155923627 155923687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155925632 155925843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155926676 155926839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155927104 155927156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155929296 155929375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155929712 155929840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155933633 155933849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155934336 155934373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGTCCGCGGGGAGCGCGACACATCCTGGAGCTGGCGGGCGCCGCAGCAAATGGGACCAACCAGCTCCAG
CCCCACTTCTCTTCCTCCCGCCAGCGGCCCCAGGTGGGGAGGTCACCAGCAGTGGGGGAAGTCCTGGGGG
CACCACAGCTGCTCCTTCAGGAGCCTTGGATGCTGCTGCTGCTGTGGCTGCCAAGATTAATGCCATGCTC
ATGGCAAAAGGGAAGCTGAAACCAACTCAGAATGCTTCTGAGAAGCTTCAGGCTCCTGGCAAAGGCCTAA
CTAGCAATAAAAGCAAGGATGACCTGGTGGTAGCTGAAGTAGAAATTAATGATGTGCCTCTCACATGTAG
GAACTTGCTGACTCGAGGACAGACTCAAGACGAGATCAGCCGACTTAGTGGGGCTGCAGTATCAACTCGA
GGGAGGTTCATGACAACTGAGGAAAAAGCCAAAGTGGGACCAGGGGATCGTCCATTATATCTTCATGTTC
AGGGCCAGACACGGGAATTAGTGGACAGAGCTGTAAACCGGATCAAAGAAATTATCACCAATGGAGTGGT
AAAAGCTGCCACAGGAACAAGTCCAACTTTTAATGGTGCAACAGTAACTGTCTATCACCAGCCAGCACCC
ATCGCTCAGTTGTCTCCAGCTGTTAGCCAGAAGCCTCCCTTCCAGTCAGGGATGCATTATGTTCAAGATA
AATTATTTGTGGGTCTAGAACATGCTGTACCCACTTTTAATGTCAAGGAGAAGGTGGAAGGTCCAGGCTG
CTCCTATTTGCAGCACATTCAGATTGAAACAGGTGCCAAAGTCTTCCTGCGGGGCAAAGGTTCAGGCTGC
ATTGAGCCAGCATCTGGCCGAGAAGCTTTTGAACCTATGTATATTTACATCAGTCACCCCAAACCAGAAG
GCCTGGCTGCTGCCAAGAAGCTTTGTGAGAATCTTTTGCAAACAGTTCATGCTGAATACTCTAGATTTGT
GAATCAGATTAATACTGCTGTACCTTTACCAGGCTATACACAACCCTCTGCTATAAGTAGTGTCCCTCCT
CAACCACCATATTATCCATCCAATGGCTATCAGTCTGGTTACCCTGTTGTTCCCCCTCCTCAGCAGCCAG
TTCAACCTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTGTTTCATTAGCACCTGGAGTCTTGCCGGC
ATTACCTACTGGAGTCCCACCTGTGCCAACACAATACCCGATAACACAAGTGCAGCCTCCAGCTAGCACT
GGACAGAGTCCGATGGGTGGTCCTTTTATTCCTGCTGCTCCTGTCAAAACTGCCTTGCCTGCTGGCCCCC
AGCCCCAGCCCCAGCCCCAGCCCCCACTCCCAAGTCAGCCCCAGGCACAGAAGAGACGATTCACAGAGGA
GCTACCAGATGAACGGGAATCTGGACTGCTTGGATACCAGCATGGACCCATTCATATGACTAATTTAGGT
ACAGGCTTCTCCAGTCAGAATGAGATTGAAGGTGCAGGATCGAAGCCAGCAAGTTCCTCAGGCAAAGAGA
GAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACAGAGTCCGATGA
AAGGAATGGGTCTGGGACCTTAACAGGGAGCCATGATTATCCAGCCAAGAAGATGAAAACTACAGAGAAG
GGATTTGGCTTGGTGGCTTATGCTGCAGATTCATCTGATGAAGAGGAGGAACATGGAGGTCATAAAAATG
CAAGTAGTTTTCCACAGGGCTGGAGTTTGGGATACCAATATCCTTCATCACAACCACGAGCTAAACAACA
GATGCCATTCTGGATGGCTCCCTAG

Translation (614 aa):
MSAGSATHPGAGGRRSKWDQPAPAPLLFLPPAAPGGEVTSSGGSPGGTTAAPSGALDAAAAVAAKINAML
MAKGKLKPTQNASEKLQAPGKGLTSNKSKDDLVVAEVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTR
GRFMTTEEKAKVGPGDRPLYLHVQGQTRELVDRAVNRIKEIITNGVVKAATGTSPTFNGATVTVYHQPAP
IAQLSPAVSQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGC
IEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAEYSRFVNQINTAVPLPGYTQPSAISSVPP
QPPYYPSNGYQSGYPVVPPPQQPVQPPYGVPSIVPPAVSLAPGVLPALPTGVPPVPTQYPITQVQPPAST
GQSPMGGPFIPAAPVKTALPAGPQPQPQPQPPLPSQPQAQKRRFTEELPDERESGLLGYQHGPIHMTNLG
TGFSSQNEIEGAGSKPASSSGKERERDRQLMPPPAFPVTGIKTESDERNGSGTLTGSHDYPAKKMKTTEK
GFGLVAYAADSSDEEEEHGGHKNASSFPQGWSLGYQYPSSQPRAKQQMPFWMAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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