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Report for CCDS17426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17426.1 Public Mus musculus 3 Ctso 23 108 98 CCDS HistoryNCBI Gene:229445Re-query CCDS DB by CCDS ID:17426.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17426.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029649.2 ENSMUSP00000029649.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029649.2Link to Ensembl Protein Viewer:ENSMUSP00000029649.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029649Re-query CCDS DB by Protein ID:ENSMUSP00000029649
Original member Current member NCBI NM_177662.3 NP_808330.1 Accepted alive Link to Nucleotide Sequence:NM_177662.3Link to Protein Sequence:NP_808330.1Re-query CCDS DB by Nucleotide ID:NM_177662Re-query CCDS DB by Protein ID:NP_808330Link to BLAST:NP_808330.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808330.1 312 Q8BM88 312 100% 0 0

Chromosomal Locations for CCDS 17426.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 81932665 81932775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81941532 81941637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81942193 81942332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81944862 81945029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81946314 81946435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81951373 81951536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81952199 81952291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81954226 81954260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGAAGCCGCAGTTGGTGAACCTCTTGCTACTGTGTTGCTGCTGTCTCGGCCGCCACGGGGTCGCCGGGA
CCTGGTCTTGGAGCCACCAGCGGGAGGCCGCCGCCTTGCGGGAAAGCCTTCATAGACACCGATACTTGAA
CTCTTTTCCTCATGAAAACTCCACTGCCTTCTATGGAGTAAATCAGTTTTCTTATTTGTTTCCTGAAGAG
TTTAAAGCTTTGTATTTAGGCAGCAAATATGCCTGGGCTCCCAGATACCCAGCAGAAGGACAGAGACCTA
TCCCCAATGTGTCTTTGCCATTGAGATTTGACTGGAGGGACAAGCATGTTGTGAATCCTGTAAGGAACCA
GGAGATGTGTGGAGGATGCTGGGCCTTCAGCGTGGTGAGTGCCATAGAGTCAGCTCGTGCAATCCAAGGG
AAATCTCTGGATTACCTGAGCGTGCAGCAGGTCATCGACTGCTCCTTTAATAATTCTGGCTGCCTCGGTG
GCTCTCCTCTCTGTGCCTTGCGCTGGCTAAATGAGACACAGTTGAAGTTGGTGGCAGATTCACAGTACCC
ATTCAAGGCAGTAAATGGCCAGTGTCGCCACTTTCCTCAATCACAAGCTGGAGTTTCAGTCAAGGATTTT
TCTGCATATAACTTCAGGGGCCAAGAGGATGAAATGGCCAGAGCACTTCTGTCCTTCGGCCCTTTGGTTG
TGATAGTTGATGCGATGAGCTGGCAGGATTATCTGGGGGGCATAATCCAACATCACTGCTCCAGTGGGGA
GGCCAACCATGCCGTTCTCATCACAGGCTTTGATAGGACAGGAAATACACCATATTGGATGGTGCGAAAC
TCCTGGGGATCCTCCTGGGGAGTAGAAGGCTATGCCCACGTGAAAATGGGAGGTAATGTTTGTGGCATTG
CAGACTCTGTAGCTGCTGTCTTTGTGTGA

Translation (312 aa):
MKPQLVNLLLLCCCCLGRHGVAGTWSWSHQREAAALRESLHRHRYLNSFPHENSTAFYGVNQFSYLFPEE
FKALYLGSKYAWAPRYPAEGQRPIPNVSLPLRFDWRDKHVVNPVRNQEMCGGCWAFSVVSAIESARAIQG
KSLDYLSVQQVIDCSFNNSGCLGGSPLCALRWLNETQLKLVADSQYPFKAVNGQCRHFPQSQAGVSVKDF
SAYNFRGQEDEMARALLSFGPLVVIVDAMSWQDYLGGIIQHHCSSGEANHAVLITGFDRTGNTPYWMVRN
SWGSSWGVEGYAHVKMGGNVCGIADSVAAVFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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