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Report for CCDS39120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39120.1 Public Mus musculus 5 Hopx 23 108 98 CCDS HistoryNCBI Gene:74318Re-query CCDS DB by CCDS ID:39120.1Re-query CCDS DB by GeneID:74318See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39120.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081964.6 ENSMUSP00000080630.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081964.6Link to Ensembl Protein Viewer:ENSMUSP00000080630.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081964Re-query CCDS DB by Protein ID:ENSMUSP00000080630
Original member Current member EBI ENSMUST00000113453.8 ENSMUSP00000109080.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113453.8Link to Ensembl Protein Viewer:ENSMUSP00000109080.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113453Re-query CCDS DB by Protein ID:ENSMUSP00000109080
Original member Current member EBI ENSMUST00000120827.8 ENSMUSP00000113295.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120827.8Link to Ensembl Protein Viewer:ENSMUSP00000113295.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000120827Re-query CCDS DB by Protein ID:ENSMUSP00000113295
Original member Current member NCBI NM_001159900.1 NP_001153372.1 Accepted alive Link to Nucleotide Sequence:NM_001159900.1Link to Protein Sequence:NP_001153372.1Re-query CCDS DB by Nucleotide ID:NM_001159900Re-query CCDS DB by Protein ID:NP_001153372Link to BLAST:NP_001153372.1
Original member Current member NCBI NM_001159901.1 NP_001153373.1 Accepted alive Link to Nucleotide Sequence:NM_001159901.1Link to Protein Sequence:NP_001153373.1Re-query CCDS DB by Nucleotide ID:NM_001159901Re-query CCDS DB by Protein ID:NP_001153373Link to BLAST:NP_001153373.1
Original member Current member NCBI NM_175606.3 NP_783199.1 Accepted alive Link to Nucleotide Sequence:NM_175606.3Link to Protein Sequence:NP_783199.1Re-query CCDS DB by Nucleotide ID:NM_175606Re-query CCDS DB by Protein ID:NP_783199Link to BLAST:NP_783199.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153372.1 73 Q8R1H0 73 100% 0 0
NP_001153373.1 73 Q8R1H0 73 100% 0 0
NP_783199.1 73 Q8R1H0 73 100% 0 0

Chromosomal Locations for CCDS 39120.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 77087739 77087816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77094866 77095009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (222 nt):
ATGTCGGCGCAGACCGCGAGCGGCCCCACGGAGGACCAGGTGGAGATCCTGGAGTACAACTTCAACAAGG
TCAACAAGCACCCGGACCCCACCACGCTGTGCCTCATCGCAGCCGAGGCGGGTCTCACGGAGGAGCAGAC
GCAGAAATGGTTTAAGCAGCGCCTGGCAGAGTGGCGGCGGTCAGAAGGCTTGCCTTCGGAATGCAGATCT
GTTACGGACTAG

Translation (73 aa):
MSAQTASGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSECRS
VTD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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